FMO03333.5prime Sequence
1237 bp (1026 high quality bases) assembled on 2008-07-09
> FMO03333.5prime
GTATAGCATACATAAAACGAAGTTATCAGTCGACATGTCCGTGATTGGCA
TCCATTTTGGCAACGAGAGCTGCTATGTTGCGGCAGCCCGATCCGGAGGA
ATTGAGACGCTGGCCAATGACTACAGTCTCCGGGCCACGCCCTCCTTTGT
GGCCTTCGATGGCAAGAAGCGTATCATCGGCGTGGCCGCTAAGAACCAGC
AGGTGACAAACATGAAAAACACAGTTGGCGGATTCAAGCGCCTGCTTGGC
CGCAAATTCAACGATCCCCATGTACAACACGAACTCACGAGCATTCCAGC
GCGCGTGGAGGCGCGCGGTGATGGCAGCATTGGCATCAAGGTGAACTACC
TCGGGGAGGATCAGCATTTCGGACCTGAGCAGCTGACGGCGATGCTCTTC
ACCAAGCTGAAGGAGACATCGGCGGCTGCCATGCAGACGCAGGTTAACGA
CTGCGTCATCGCCTGTCCCGTGTTCTTTACCAATGCAGAGCGTAAGGCTC
TCCTGGATGCCGCCCAGATCGCCGGACTGAACGTCCTGCGATTGATGAAC
GAAACGACGGCCACCGCGCTGGCCTACGGCTTCTACAAGAACGATCTGTT
CGAGGACAAGCCACGTAACGTGATCTTTGTTGACTTTGGGCACTCGTCAC
TGCAGGCCAGTGCCTGTGCCTTCACCAAGGGCAAACTGAAGATGCTGGCC
AGCACCTGGGACCAGATCGGTGGACGCGACATTGACTTGGCTCTGGGCGA
TTACTTCGCCAAGGAGTTCCAGGAGCGTTACAAGATCAACGCCAAGACCA
ATGCCCGTGCCAATCTGCGCCTGTTAACCGAAATCGAAAAGCTGAAGAAG
CAGATGTCCGCCAACAGCACCAAGCTGCCGTTGAACATTGAGTGCTTCTT
GGATGATATCGACGTCTCGTCGTCCATGCAGCGGTCGCAGATGGAAGGAG
CTGTGCGCCCCCGTCTTGCAGCGCGTCGAGCAGACTTTCAGCGTTTGCTA
GCCGAGTCTAAGCTGCAGCTGGACGAACTTCCCCTCCGTGGAGATCGTTG
GGCGGAAGCTCACGCATTCCGTCCGATAAAGCAGCTTATTGAGCCAGGCA
TTAGACAAGCAGACTAGACACATTCTACAGACGATCTGTGTCTCGGAACA
GGCTTCGAGGCCCCATCTGTCCCAGCGTTACTGTCCAGAGATTGCGAATT
CTGTATATTACGACAACTCACCGCCAGCTATACACGA
FMO03333.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsc70Cb-RI | 3590 | CG6603-RI | 561..1617 | 35..1094 | 5120 | 99.2 | Plus |
| Hsc70Cb-RH | 3258 | CG6603-RH | 260..1316 | 35..1094 | 5120 | 99.2 | Plus |
| Hsc70Cb-RG | 3283 | CG6603-RG | 285..1341 | 35..1094 | 5120 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14039048..14039997 | 142..1094 | 4475 | 99.2 | Plus |
| 3L | 28110227 | 3L | 14037644..14037750 | 35..141 | 520 | 99.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:11:37 has no hits.
FMO03333.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:02:50 Download gff for
FMO03333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsc70Cb-RC | 382..1461 | 28..1110 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:06:04 Download gff for
FMO03333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsc70Cb-RG | 277..1356 | 28..1110 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:04 Download gff for
FMO03333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsc70Cb-RG | 277..1356 | 28..1110 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:04 Download gff for
FMO03333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14037636..14037750 | 28..141 | 95 | -> | Plus |
| 3L | 14039048..14039997 | 142..1094 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:06:04 Download gff for
FMO03333.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14030736..14030850 | 28..141 | 95 | -> | Plus |
| arm_3L | 14032148..14033097 | 142..1094 | 99 | == | Plus |
