FMO03335.5prime Sequence
860 bp (859 high quality bases) assembled on 2008-07-09
> FMO03335.5prime
GTATAGCATACCTAATACGAAGTTATCAGTCGACATGCGCGAGCCCAACC
TGTACGTGATCCTGTCGCACGCGCTGATCGGCTGCGGCTTCTTCTTCCTA
TACGTGCAGCATGTGCGCGTGATCTTCGAGACGCGCACCAACATCCAGCA
GCTCAATCAGCTGGAGCGGGAGGCGCTTCTGCGGCGCGAGGATGCCCTGT
ACTATGCCTTCTACAAGCAGCTGGCCGAAGGGCCGGACTTTTGGCACGGC
TACGAGCAGCTGAAGAACGTCACGGACATCGAGTATCCGCACAGTGTCAA
TGTGCTGCAGCGATTCTACGTGCTGCCGGAGCTGGTCACGGCGTACTTCT
TTCACGTAGTGCGCTCCGGCTTCAATCCAATGGTGCAACCGATGCAGTTC
TATCTGGAGTTCGTGTGGCTGATGGGCGGGGTAACCCTGCTGGTACTCTA
CCTGTACGGAACGCTGCTCAGCGAGAACATTTTCGGTGGCATATACGGCG
TAATCTCGTACCTGATGTTCCACAGCTTCGTGGCCAAGATCTATGAGCGG
CCGCTGGCGCGGGAGAACTTCGCCTTTCCGTTCATTTTCCTGCAGATGTT
TTATCTGTGTATCTGCATCGGAAGGATCATACACCGACAGCGGCACACAT
CTCGCATGTTCATGATCTTCGCCATGTCGCTTTTCACCGCCTGCGCCCTA
CTCTCCTGGCAGTTCTCCACCTTCATCTTCACCACCCAGATCCTGATCAT
GATGACGTCCTGAACGCGAGCGCGCTGCCCACGGCTCTGGTCAACGCCTT
CGTGCTGGACTACTCGCTGTCGCACCTGCTGGGCCACGCTCTCGCCTTTG
TAATGTCGCA
FMO03335.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:43:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6659-RA | 3356 | CG6659-RA | 144..970 | 35..860 | 4110 | 99.9 | Plus |
| CG6659-RB | 3426 | CG6659-RB | 259..1040 | 80..860 | 3885 | 99.9 | Plus |
| CG6659-RB | 3426 | CG6659-RB | 92..138 | 35..81 | 235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:43:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18656324..18656645 | 664..343 | 1610 | 100 | Minus |
| X | 23542271 | X | 18656711..18656976 | 345..80 | 1330 | 100 | Minus |
| X | 23542271 | X | 18656074..18656271 | 860..664 | 940 | 99.5 | Minus |
| X | 23542271 | X | 18657097..18657143 | 81..35 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:43:56 has no hits.
FMO03335.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:07:29 Download gff for
FMO03335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6659-RA | 137..969 | 27..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:22 Download gff for
FMO03335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6659-RA | 137..969 | 27..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:24:06 Download gff for
FMO03335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6659-RA | 137..969 | 27..859 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:24:06 Download gff for
FMO03335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18656075..18656270 | 665..859 | 99 | <- | Minus |
| X | 18656324..18656645 | 343..664 | 100 | <- | Minus |
| X | 18656714..18656975 | 81..342 | 100 | <- | Minus |
| X | 18657098..18657150 | 27..80 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:22 Download gff for
FMO03335.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18550108..18550303 | 665..859 | 99 | <- | Minus |
| arm_X | 18550357..18550678 | 343..664 | 100 | <- | Minus |
| arm_X | 18550747..18551008 | 81..342 | 100 | <- | Minus |
| arm_X | 18551131..18551183 | 27..80 | 94 | | Minus |
