FMO03337.5prime Sequence
1220 bp (1004 high quality bases) assembled on 2008-07-09
> FMO03337.5prime
GTATAGCATACATTAAACGAAGTTATCAGTCGACATGGCCGCTGTGCTGC
CGGAAAACGCGGCCGAGATCGCGGTGGCCAATGCAATCAATAACATCAAC
GGGAATGGAAATGGGAACGGGCGCAATCGGGTGCTACCTGGCGGATTAGG
TGGTGGTGGCCAGAACAACATGATGAATATGCGGGATCGACTGTTCCATG
CCATATACTTTCGGGCGGCGGCCACCTATGCGGAGTTGGTTCCAAGGAAG
GTGCAGTTGACCATTGAGTTCCTGCTGCTGGCCAAGGCCTTGCTGTTCTT
CTTTACGCTCATCTACGTGCACAACTCCTTCATCAAGAATCCCTGCACTT
GCCTGCAGGATGTTAAGAACTGGCCGCGCGAAGGCGTCATCAGAGTGGAA
ATTATTCCTCACCTGGCGGAGAAGCGTGCAATTTGGCAGGGAATTAAAAG
GGACCAAGAAATAGTGCGCTCCCTCAAGGATTCCTACTACTATGGTATTG
GACCCCAAACTCGTCAAAATCACGAAACGCTTAAACGGTACGAGTCCATT
CTGGGAAAACTGGGTCTGCCCGTCCGACCAACATTCGCTTACAGTAACGA
ATCCCTGTACTACTACTTTGATGCCATCAACATCCTGGACACCTACGACC
ATCCAAATGCAATACAGCTCAAGAACGAAGAGGATGATGAAGAGCAGTAC
ATTGTGGAGTATTCATTGGAATACGGCCACCTCCGCTTGTCTTCATCCAC
GCGAAAGCGTCTACGCATACCCGTACTCACTGTCCAACTGGATCCCAATA
CGGACAAGTGTTTTGGGGACAGTTTGACGCGATATCTGCTCAAACGTTTG
CTAGCTATGATGACTTACTAATGGCATCCGTACGAACCATAGCCGAGCAG
GAGGAAAATAAGGGCTACTTGCGCAATGTTATAACCGGCGAACATTATCG
CTTCGTCTCCCATGTGGTGGGCAGCCTGGAGCAGTTACCCGGCTGCCTTC
TGTGTTATGATACTATCACGTCTCGTGTCGATGTTGCTGGCGCTACTACC
ACCACCAGATCTTGTGTTATAGCCGACCTGCTGCAGATGCTGGGAGATCA
ATGGGCTGCAGATCCAATTCGCAACGTGCTACTGTCAATTGGCGCCTCGA
TGATGAGCCCACGTCTGGATTCTTATGACACCTAACGCGCACAACTCATA
CGTGATGCTCCTGGGAGCAT
FMO03337.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8405-RB | 4466 | CG8405-RB | 146..1266 | 34..1145 | 5045 | 97.4 | Plus |
| CG8405-RA | 3169 | CG8405-RA | 146..1266 | 34..1145 | 5045 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16048493..16048695 | 487..689 | 1015 | 100 | Plus |
| 2R | 25286936 | 2R | 16048753..16048918 | 689..854 | 830 | 100 | Plus |
| 2R | 25286936 | 2R | 16048130..16048278 | 245..393 | 745 | 100 | Plus |
| 2R | 25286936 | 2R | 16048981..16049144 | 852..1016 | 730 | 97.6 | Plus |
| 2R | 25286936 | 2R | 16047793..16047922 | 34..163 | 650 | 100 | Plus |
| 2R | 25286936 | 2R | 16048334..16048429 | 391..486 | 480 | 100 | Plus |
| 2R | 25286936 | 2R | 16047981..16048067 | 161..247 | 435 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:37:06 has no hits.
FMO03337.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:01:17 Download gff for
FMO03337.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8405-RA | 118..1201 | 27..1109 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:58 Download gff for
FMO03337.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8405-RA | 142..1225 | 27..1109 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:20:08 Download gff for
FMO03337.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8405-RA | 142..1225 | 27..1109 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:20:08 Download gff for
FMO03337.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16048754..16048919 | 690..854 | 99 | -> | Plus |
| 2R | 16048984..16049146 | 855..1017 | 96 | -> | Plus |
| 2R | 16049204..16049253 | 1018..1067 | 88 | -> | Plus |
| 2R | 16049322..16049346 | 1068..1093 | 92 | == | Plus |
| 2R | 16047792..16047922 | 31..163 | 98 | -> | Plus |
| 2R | 16047984..16048066 | 164..246 | 100 | -> | Plus |
| 2R | 16048132..16048278 | 247..393 | 100 | -> | Plus |
| 2R | 16048337..16048429 | 394..486 | 100 | -> | Plus |
| 2R | 16048493..16048695 | 487..689 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:58 Download gff for
FMO03337.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11935637..11935783 | 247..393 | 100 | -> | Plus |
| arm_2R | 11935842..11935934 | 394..486 | 100 | -> | Plus |
| arm_2R | 11935297..11935427 | 31..163 | 98 | -> | Plus |
| arm_2R | 11935489..11935571 | 164..246 | 100 | -> | Plus |
| arm_2R | 11935998..11936200 | 487..689 | 100 | -> | Plus |
| arm_2R | 11936259..11936424 | 690..854 | 99 | -> | Plus |
| arm_2R | 11936489..11936651 | 855..1017 | 96 | -> | Plus |
| arm_2R | 11936709..11936758 | 1018..1067 | 88 | -> | Plus |
| arm_2R | 11936827..11936851 | 1068..1093 | 92 | == | Plus |
