FMO03339.5prime Sequence
1205 bp (1053 high quality bases) assembled on 2008-07-09
> FMO03339.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGATGGCGCGTCGC
GGTGGAAAGCGCATACGTATGGATGATCCGCCGCCGGACTACGAGGAATT
GCACAGCGATGCCCTGAATGAGAGCACCTCGGATGCGGACAGCCCCACCA
AACGGATGACCAGGCTCAGAGCGCGGGGCGGAGTGCGGGACAAACCGCCC
ATAATTGATGATGACGAGGATGACTTCTTCGCGCCAATCGCGCGCAAACG
AAAGACTCCCGCCACCCGCAAGGGGCCAACAGAACGCAAGGAACGCGTTG
AACGACCGCGCAAGGAGCCCGTCGACAAGGGACATCACGAGCGGATAGAC
AGTGAGCGGGAGATAACCACGGACGAGAATAGTCTCTACTATATTGTGCG
ACACTCGAAGAACCCTATTGCTAGCATTGTTGACCAATGGATTGAGCAGT
ATAAGGCAAACCGAGAAACGGCCCTGGTTGCACTGATGCAGTTTTTTATT
AATGCTAGTGGTTGCAAGGGAAAGATATCCGAGGACATTCAGTATCCTGT
TGATCACACATCAATTATCCGACGGATGACCGAAGAGTTTGACGAAGAAA
GCGGCGAATATCCCTTGATCATGAGCGGAACGCAGTGGCGAAAGTTTAAA
AATAATTTCTGCGATTTTGTGCAAACCCTTGTGAAGCAATGCCAGTACTC
TATTATCTACGACCAGTTTCTGATGGACAACGTCATATCCCTGCTTACGG
GCCTCTCCGATTCGCAGGTGCGAGCTTTTCGACACACAGCCACTCTGGCG
GCCATGAAGTTGATGACGGCTTTGGTGGATGTCGCCCTATTGGTTTTCGA
ATAACTTTGACAATGCTGCGAAGCAATTCGAAGCTGAACGCGTTAAGTCC
CGAGATCGTCGTGCTTCTGACCGTTTGGACTCGCTTATGACTAAACGTTC
CGAAATGGAAGAGAATATGGACGAGATAAAGAGCATGTTGACCTACATGT
TCAAGTCGGTGTTCGTTCACGCTACAGAGAAAGTCTTGCCTGATATACGA
GTCATATGATTGGGCGAAATCGGCATCTGGAATGGCAACCTATCGCAAAC
TTTCTTGACAACTCTTACTTAAATATTCGTGACCCTGCACGACGAATCGA
GGTCACTGGCAGTTTGCATCGTTGTGCCGCGTTACGAAAAGAGAGTGACT
CAGAG
FMO03339.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SA-RA | 3634 | CG3423-RA | 119..1210 | 36..1126 | 5150 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6950671..6950988 | 105..422 | 1590 | 100 | Plus |
| 2L | 23513712 | 2L | 6951274..6951573 | 597..897 | 1455 | 99.7 | Plus |
| 2L | 23513712 | 2L | 6951045..6951223 | 423..601 | 880 | 99.4 | Plus |
| 2L | 23513712 | 2L | 6951621..6951848 | 892..1118 | 740 | 91.3 | Plus |
| 2L | 23513712 | 2L | 6950539..6950609 | 36..106 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:33:55 has no hits.
FMO03339.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:01:19 Download gff for
FMO03339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SA-RA | 94..1195 | 28..1129 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:18 Download gff for
FMO03339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SA-RA | 113..1214 | 28..1129 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:21:29 Download gff for
FMO03339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SA-RA | 113..1214 | 28..1129 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:21:29 Download gff for
FMO03339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6950533..6950609 | 28..106 | 94 | -> | Plus |
| 2L | 6950673..6950988 | 107..422 | 100 | -> | Plus |
| 2L | 6951045..6951218 | 423..596 | 100 | -> | Plus |
| 2L | 6951274..6951573 | 597..897 | 99 | -> | Plus |
| 2L | 6951627..6951848 | 898..1118 | 93 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:18 Download gff for
FMO03339.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6950533..6950609 | 28..106 | 94 | -> | Plus |
| arm_2L | 6950673..6950988 | 107..422 | 100 | -> | Plus |
| arm_2L | 6951045..6951218 | 423..596 | 100 | -> | Plus |
| arm_2L | 6951274..6951573 | 597..897 | 99 | -> | Plus |
| arm_2L | 6951627..6951848 | 898..1118 | 93 | == | Plus |
