FMO03340.5prime Sequence
1182 bp (976 high quality bases) assembled on 2008-07-09
> FMO03340.5prime
GTATAGCATACATAATACGAAGTTATCAGTCGACATGGTAAAGAAGCGTC
AGGCGGACAGTCGCGACCACGATTGCTCAACGGATTCCGGCAATGAGGAT
CTGCATCATCGAAAAGGACTCGGCTCGCCCGGTCAGTCGGATGGCGCCAC
CCCCACCACCGCCAGCTGCCAGCACATCAAGAAGGCGGTGGACGCGGCCC
GACTAAGGCGTCTACTGAAGTCCACGGGTCTACTCTACGAGTGCAGCCAA
TGTCAGAAGCTGGGCAAGACAGCGGGCAGCGCTGCGGGAGCGGGAGCGAG
TGAAGGAGCTGTCGGTCCTGGCGGAAATCCGGTCACCTTCGAATTTGACA
ACACCCTGTGGCTGTGCCTCAAGTGCGGCAGCCAGCTGTGCGGGAGGGCA
CGCCACAAGCACGCCTTAGAACACTACCAGACACCTCATTCGGACTCACA
TGCCCTGGCCATGAATACGCGCTCCTTCGACATCTGGTGCTATGAGTGCG
ACATGAAGATCTGCTCCAATCTGCGCAAAAACCTGCTTGAGTGCGTGGAG
CTGGTCAAGAAATTGGCCCAGAAGCCGCCCACTAGCAAGGTTACGCCCAG
TACGCCAACGATTAGCTACATCGAGGAGAAGCTTAAAGCCGCGCTGGAGC
ATCTCACACCAATAGTGCCAATGACTGGCGGATCATTTGACGACTCCAGC
AGTAGAGGGTCTCTGGCGGCGGCCGGTGGCGGGGGCGGGGTCGGTTCATC
TCGAAATAGGCAGGTGGCCATACCGATGCCACCACCAGAGCCTAGCTCCG
GACTTTCGACCTCAGACTCGCTGACCAGTGTGCCGGGGTATGGCAAAGAG
GATTGACCAGTACTCGGCCACCACCAATGGCAACACTGGGGAACAAACGA
CTCCTGACCCTAAAGACGCCGCGCATCGAAATTGAACCGCCTGCCCCGCG
TGCAAGGATTGACCAACCTGGGGCAATACATGCCTTCTTTTATGGCGGTG
ATGCATGGCCTCGCCCAAACCCCGTTTCTACTTACGTAACTGAAAGACCT
GTCGGAGCCGGAAAAAAATTCATCTTACCTGGCGGACGTTCACCCATAAG
GAAAAAGGTAACATTGAGACCTAGCGAAGAATTCAGCGTACCCTGGTTCC
TCCTTGGGGGGTGGGAACTCCCGGGCGCGCGA
FMO03340.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:51:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4165-RF | 4454 | CG4165-RF | 201..1281 | 34..1118 | 4905 | 97.4 | Plus |
| CG4165-RE | 4093 | CG4165-RE | 153..1233 | 34..1118 | 4905 | 97.4 | Plus |
| CG4165-RB | 4066 | CG4165-RB | 126..1206 | 34..1118 | 4905 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:51:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5423115..5423741 | 427..1059 | 2625 | 96.5 | Plus |
| X | 23542271 | X | 5422621..5423017 | 34..430 | 1985 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:51:09 has no hits.
FMO03340.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:07:34 Download gff for
FMO03340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4165-RC | 143..1078 | 34..972 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:38 Download gff for
FMO03340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4165-RB | 126..1061 | 34..972 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:27:50 Download gff for
FMO03340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4165-RB | 126..1061 | 34..972 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:27:50 Download gff for
FMO03340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5422621..5423017 | 34..430 | 100 | -> | Plus |
| X | 5423119..5423750 | 431..1067 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:38 Download gff for
FMO03340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5316654..5317050 | 34..430 | 100 | -> | Plus |
| arm_X | 5317152..5317783 | 431..1067 | 96 | -> | Plus |
