FMO03341.5prime Sequence
1254 bp (937 high quality bases) assembled on 2008-07-09
> FMO03341.5prime
GTATAGCATACATTAAACGAAGTTATCAGTCGACATGCGGCGCAGTCTGG
CTCCCAGCCAACGTGGACCACTGCGTCCCGAGTCCCGTCACTCCTTCACG
CCGCCACTGCTGAAGAAAAACAAGCGATCCTGCCAGCAGGAACTGGAGCG
AGAGCAAGAACTGGACAGAAGACGACTGGGCGCCCTCCGAGATGCCAGCA
ACACATCAGAGCTCCCACTGCCTATTCGCTTCACGGCGAACAGCGAGTAT
GAGTTGGCCATTGCCAAGGTTCTGGCACGGAAGTTCAAGGTGCCCATGGA
CAATTACGTACCGGATTACGGTGGTAAACGGGTCCTGGGCGTGCGGCGCT
GCATTTCCCGACAACCCCTACACGATCCGATGGCCTGCAACGCCTTGGTA
CTCTTCCATCCACCCGCCTACACAGAACACGAGCGCATGGGCATGGATCC
GACCAAGGTTCTGGTGCACGTCGTCGTCGATCCGCTGCTGAACAACATAT
TGCGGCCGCACCAGCGCGAGGGAGTGCGTTTCATGTACGAGTGTGTGGAG
GGAAAGCGGGGCAACTTCAATGGATGCATCATGGCCGACGAAATGGGTCT
CGGGAAGACGCTGCAGTGCGTAACGCTGGTCTGGACACTTCTAAGGCAGG
GGCCCGAGTGCAAGCCGACGATCAACAAAGCCATTGTCGTGTCTCCATCA
TCGCTGGTTAAGAACTGGGAGAAGGAGTTTACCAAGTGGCTTCACGGTCG
ACTCCTTTGCCTGCCCATGGAGGGCGGGACCAAGAGAACACCATCCGAGC
ACTCGAGCAGTTCTCCATGACTTCTGCCCGGCTGGGGAAACCTGTTCTGC
TCATCAGCTACGAGACATTTCGCATCTACGCGGAGATCCTGTGCAAGTAC
GAAGTGGGAATGGTGATATGCGACGAGGGACATCGCTTTCAGAACAGCGA
CATCTGACGTATCATGCTTCTCATGGGACTGGAGACAAAGCGACGGGTCT
TTGCTTTCCGGCACTCCCATTCAGACGATCTACTGAGTACTACAGCCTGG
TGAACTTTTGTTAACCCGGAGATGCTTGGGAACGGCGGGCCGGGTTTATA
ACGGCAACTTTCAAGAGCGCATTTCCTGCGGGGTCCAGAATACTGGACTC
TCCGGAACATGGAAGCGAACACGGGTCATACAAAAACCAGGACTTGTATT
GGTCGGTCAATCAGTGTTCTTCTCGCCGTATTATCTACAACTACTCTCCC
CAGA
FMO03341.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| okr-RA | 2878 | CG3736-RA | 51..1225 | 35..1216 | 5015 | 96 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2991599..2992650 | 1088..37 | 4715 | 98.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:45:52 has no hits.
FMO03341.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:02:54 Download gff for
FMO03341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| okr-RA | 44..1125 | 23..1110 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:03 Download gff for
FMO03341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| okr-RA | 42..1123 | 23..1110 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:25:17 Download gff for
FMO03341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| okr-RA | 42..1123 | 23..1110 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:25:17 Download gff for
FMO03341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2991580..2992650 | 37..1110 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:03 Download gff for
FMO03341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2991580..2992650 | 37..1110 | 97 | | Minus |
