FMO03342.5prime Sequence
1252 bp (986 high quality bases) assembled on 2008-07-09
> FMO03342.5prime
TATAGCATACCTTAAACGAAGTTATCAGTCGACATGATGATGGAGAACGG
ACTCTCCATGGAGTACGGAGATGGCTACATGGAGCAGGAGGAGGAGTGGG
AGCGCGAGGGCCTGCTCGATCCTGCGTGGGAGAAGCAACAGAAGAAGACA
TTTACCGCCTGGTGTAACAGCCATTTGCGCAAGGCCGGTACAGCCATCGA
CAACATCGAGGAGGACTTCCGCAACGGCCTCAAGCTGATGCTGCTGCTGG
AGGTGATCTCCGGCGAGACGCTCCCCAAGCCCGATCGCGGCAAGATGCGC
TTCCACAAGATCGCCAACGTGAACAAGGCTCTCGACTTCATCGCCTCCAA
GGGCGTCCACCTGGTCTCTATCGGCGCCGAGGAGATCGTCGATGGAAACT
TGAAGATGACTCTGGGTATGATCTGGACGATTATCCTGCGCTTCGCCATT
CAGGACATCTCCGTGGAGGAGATGACCGCCAAGGAGGGTCTGCTGCTGTG
GTGCCAGCGCAAGACGGCTCCCTACAAGAACGTCAACGTACAGAACTTCC
ATCTGTCGTTCAAGGATGGTCTGGCCTTCTGCGCCCTTATCCATCGCCAT
CGTCCAGATCTAATCGACTACGCCAAGCTGTCCAAAGACAATCCTCTGGA
GAATCTTAATACTGCCTTCGATGTGGCCGAGAAGTACCTGGATATTCCGC
GCATGTTGGATCCAGATGATCTCCAGAATACAGCTTTGCCCGATGAGCGG
GCGGTGATGACGTATGTGTCCTCGTACTATCACTGCTTCAGTGGCGCCCA
AAAGGCGGAAACCGCTGCCAACCGGATCTGCAAGGTGCTCAAGGTCAACC
AGGAGAACGAACGCCTCATGGAAGAGTACCAGCGTCTGGCCAGTGATTTG
CTGGAGTGGAATCCGTCGCCACCATGCCCTGGTTGAACTCGCGCCAGGCC
GACAACTCGCTGGGCAGGTGTGCCAAAAAAGCTGGAGAAGTACCGCCCCC
TACCGTCGCCAGCCACAGCCCCCCCCTTGGGGGAGCAAAGCCCAGCTGGA
AACCAACTTCAACACGCTGCAGACCAGCTGGCCCCTGTCCACCGGGCCGC
CTACCTGCCCACCGAAGGCAGAACGGTGTCCGACATTCCTCCCAACTCCG
GAAAGGCCCTGTGACCTTGCCCGAACGCTTGAAAGAATGGTCTGCGTACC
GAACCACTGGCGCCTCGTGAAGCGCTCCTGTAGAATATCCTGTTGCTCCA
CT
FMO03342.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:10:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Actn-RF | 3877 | CG4376-RF | 399..1498 | 34..1136 | 4930 | 97 | Plus |
| Actn-RA | 3511 | CG4376-RA | 399..1498 | 34..1136 | 4930 | 97 | Plus |
| Actn-RI | 3516 | CG4376-RI | 404..1503 | 34..1136 | 4465 | 94.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:10:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2030442..2030861 | 565..146 | 2100 | 100 | Minus |
| X | 23542271 | X | 2030215..2030370 | 718..563 | 780 | 100 | Minus |
| X | 23542271 | X | 2034955..2035068 | 147..34 | 570 | 100 | Minus |
| X | 23542271 | X | 2027636..2027871 | 1136..898 | 485 | 85 | Minus |
| X | 23542271 | X | 2027935..2028033 | 897..799 | 450 | 97 | Minus |
| X | 23542271 | X | 2028664..2028751 | 805..718 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:10:06 has no hits.
FMO03342.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:05:52 Download gff for
FMO03342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Actn-RA | 393..1502 | 26..1139 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:08 Download gff for
FMO03342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Actn-RA | 393..1502 | 26..1139 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:49:49 Download gff for
FMO03342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Actn-RA | 393..1502 | 26..1139 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:49:49 Download gff for
FMO03342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2027935..2028027 | 805..897 | 97 | <- | Minus |
| X | 2028665..2028750 | 719..804 | 100 | <- | Minus |
| X | 2030215..2030368 | 565..718 | 100 | <- | Minus |
| X | 2030443..2030859 | 148..564 | 100 | <- | Minus |
| X | 2034955..2035074 | 26..147 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:08 Download gff for
FMO03342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1921968..1922060 | 805..897 | 97 | <- | Minus |
| arm_X | 1922698..1922783 | 719..804 | 100 | <- | Minus |
| arm_X | 1924248..1924401 | 565..718 | 100 | <- | Minus |
| arm_X | 1924476..1924892 | 148..564 | 100 | <- | Minus |
| arm_X | 1928988..1929107 | 26..147 | 96 | | Minus |
