FMO03343.5prime Sequence
1242 bp (998 high quality bases) assembled on 2008-07-09
> FMO03343.5prime
TAGCATACATAAAACGAAGTTATCAGTCGACATGTCGGAAACGTCAAGCG
TCAACGTGGATGCGGACCGAGATTGCAGAAGGATTGAGGGCCTCCGACAG
CGCTCACAACGCCTTGCTGCCCGCCTCCAGCAGATGCAGAGGGAAATGGA
GTCTAATGCATCCAGCAAAGACCTATCGGCCAACAATGCCGTTATTCCGC
TGCAGCCACTAATGCGCTGGGCGGAACCACGGCCACATCCCAACCAATCC
CAACCATCTGCTCGGAGCAACAGCAGGCAGGCCATTCCTTACGGTGTGCC
AGTATCCACGCCAGCGCCGGTAGCTATGCAATTGCCCTACCACGTAGCAT
TCGCCTCCTACCAGGCGACCATGCAGATTCCCTGCCTTCAGCCACTTTCG
CATTTGCACGTCGTGTCTAGTCCCAGCCATCGGTTAATAGCGAAAAAGAA
GTCGAAGCGGGCTCTTCGAAATGAGGTGGAAGCTCTTCAGGATATGGTCA
AACATCTTTCACACCTCTCCCCAGATGTTAACGCGTATGCCTGCCAGCTG
ATACGTAAAAACGAGATCCTTTCTCAGCTCGAGTGGAGTCAGACCAGGTC
AGAAGCACATCCGCAACAGGTTGGTTACCAGGGGCGGCATCGCCACGATT
CTGAGGTCTCTGCTACAAACAATGGAAGTCATGTACAGCAGCAACCGAAA
CTAGGACGAAGGCAACGCAATAGCAAGAAAAACGATGGATCCGGTAGCAA
TGGGACCCAATCGCAAAAAACCGAACTAGAGGCCATGCGGTCGTACATAA
ACAAGATTGTCCAACGTCACGTGGGTATGGATCACCAGTTGTCGGAAGAC
TTGATTTTCAAAGGTAACTTCTCCGACCTGGAAGCGCATGCGCAGAGACT
AGTTGCGGCGGGTTATGGGCGCATTGTAGAAGAGGAAATCCGGGTTAACC
GCAGGAACAACAGGACAGGCCTTTTTTAATCATGTCCACTGATCGAAGAG
CACTCGAACGGAGATGGCATCGTGCTCTGCCAGTGGCTAGGCGCTTATGC
TTCGATGGGTGACAAGTACGTGCAATCGTGCTAAACCTGGTGCTCAGGTA
GTCAAAGACAGCTGGATCCCTTCGTCTGGGTGAATTCTGGTGGCAGGCCC
TCATTATCCTCTTGGCGGATGGTGAGGACTTTCGGAACATTCCCGGAGTC
CAGGGACCTCTGAAGATCCAGGATTGACGCCACCGTGTGGGA
FMO03343.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16940-RA | 3605 | CG16940-RA | 137..1290 | 32..1186 | 5225 | 97.7 | Plus |
| CG16940-RC | 3546 | CG16940-RC | 78..1231 | 32..1186 | 5225 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 212845..213910 | 32..1098 | 4885 | 98.2 | Plus |
Blast to na_te.dros performed 2014-11-28 20:12:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbuz\Galileo | 2304 | Dbuz\Galileo GALILEO 2304bp | 126..200 | 1034..960 | 114 | 61.3 | Minus |
| Dbuz\Galileo | 2304 | Dbuz\Galileo GALILEO 2304bp | 2108..2182 | 960..1034 | 114 | 61.3 | Plus |
| Dbuz\BuT4 | 1447 | Dbuz\BuT4 BUT4 1447bp | 1077..1151 | 1034..960 | 114 | 61.3 | Minus |
FMO03343.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:07:35 Download gff for
FMO03343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16940-RA | 107..1269 | 29..1193 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:07:06 Download gff for
FMO03343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16940-RC | 74..1238 | 25..1193 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:50 Download gff for
FMO03343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16940-RC | 74..1238 | 25..1193 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:50 Download gff for
FMO03343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 212844..213980 | 30..1165 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:07:06 Download gff for
FMO03343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 212844..213980 | 30..1165 | 97 | -> | Plus |
