FMO03346.5prime Sequence
1004 bp (809 high quality bases) assembled on 2008-07-09
> FMO03346.5prime
CATACCTTAAACGAAGTTATCAGTCGACATGGCGGAAGGCGGCAGCAAGC
GCATCAACGTGGTTGTAAAAACGCCAAAGGACAAGAAAACGGTCGAAGTT
GACGAAGATTCTGGAATAAAAGATTTCAAAATTCTGGTTGCACAAAAGTT
CGAGGCGGAGCCCGAGCAGCTCGTGCTCATTTTTGCCGGCAAAATTATGA
AGGACACGGACACCCTTCAGATGCACAACATCAAGGACAACCTGACGGTG
CATCTGGTGATTAAGGCGCCGACGCGCAACAACGAGCAGCCGGCCCGACA
GCCGGCTGACGTGCGCCAAACGCCCTTTGGCCTCAATCAATTCGGTGGCC
TGGCCGGAATGGAGGCACTTGGAGCCGGATCGAACACGTTCATGGATCTG
CAGGCGCGCATGCAGAACGAGCTGCTCAACAATGGCGACATGCTGCGCTC
CCTGATGGACAACCCGATGGTGCAGCAGATGATGAATAATCCGGATACCA
TGCGTCAGCTTATCACGTCCAATCCGCAAATGCATGACCTGATGCAGCGC
AACCCCGAGATCTCGCATATGCTTAACAATCCGGACCTGCTGCGCCAGAC
GATGGAGCTGGCCCGCAATCCCTCGATGTTGCAGGAGCTGATGCGTTCGC
ACGACCGCGCCATGTCCGAATCTGGAGTCGGTGCCGGGCGGCTATAGCGC
CCTGCAGCGCATCTACCGCGATAATTCAGGAGCCAATGATGAACGCGGCC
ACGGAATCCTTTGGTCGCTACCCCTTTGCCGGCCTGGTCTACGGCGGCGG
TTCATGAGCCGGCAACATCCTTCGCAGGCACCGAGAACGCAACCCCTGCG
AATTCATGGAGCGGTGCAATTCAGAAACCAATGGAACAGCCGGTGGCTCC
CGCGCCGGCTATCCAACGGGGATCTGGCCTCGAAAATGTGCTCACACGCC
GGCATGCCAACCTGCTCAAATAAATGGCGAAAATCCGTCTGAATGCAAAA
CTGG
FMO03346.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ubqn-RB | 3429 | CG14224-RB | 189..1141 | 24..967 | 4165 | 96.6 | Plus |
| Ubqn-RA | 3011 | CG14224-RA | 189..1141 | 24..967 | 4165 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19684440..19685240 | 125..921 | 3405 | 97.3 | Plus |
| X | 23542271 | X | 19683996..19684096 | 24..124 | 490 | 99 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:27:19 has no hits.
FMO03346.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:02:51 Download gff for
FMO03346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14224-RA | 247..1158 | 21..929 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:58 Download gff for
FMO03346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ubqn-RA | 187..1098 | 21..929 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:51 Download gff for
FMO03346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ubqn-RA | 187..1098 | 21..929 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:51 Download gff for
FMO03346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19683994..19684096 | 21..124 | 98 | -> | Plus |
| X | 19684440..19685248 | 125..929 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:58 Download gff for
FMO03346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19578027..19578129 | 21..124 | 98 | -> | Plus |
| arm_X | 19578473..19579281 | 125..929 | 97 | | Plus |
