FMO03347.5prime Sequence
1020 bp (862 high quality bases) assembled on 2008-07-09
> FMO03347.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCCCCTGAACGA
TGTGGCCCCCGCCGGTGGTGGAGCTTATCCGGAAAATGGAACCAAGCACA
AGGTGTCGGGAATGTGGAAGCCGGACTCGTCGGCCGGCTCCAATTCCGGC
TCGGGATCGGCGGGACTATCCCTGTTTAGCCTGCAGGGCCAAAAGTGGCA
GCAGGTCTTCGACATGGAAAAGGTCATCAAGCAACTGCGAACGGCTGAGA
AGACGTATCTGCGTGGTGGAAAGAACTCCTCCGCCGGCGCAGATCAACAG
GCGAAGGTGCAGGTCCAGCGTCTGCAATCGGCGGACATGGCCTACTACGA
TCTGGCGCCGAAGCTGGCCAGTCGCGATATAGTACTCTGTAGTTCCTGCT
CGGGATGTTACACGAAGGCAGGTTTCCAGCACCACATTGCGCTGCAGCAT
CCTAGCGTCTGGGAGGCCACATCCAGCAAAGTGAATCCCAATCCAAATGG
GACAGCCATATCCAGCGACTCTCGTCTCACTGCCACGGAAATCAGTCAGG
AGGGCGGGGCTATCGTGCCAAGTTCGCCCACGGATACGCTTTCGGCCTCG
ACGCTCTCCAGTTGCTCGAACGGGTCCAGCAGCTCGGCTTCCCTGCAGCA
TCCGGCTGCTGCGGGTTCATCCAGCACCACGTCGTCTTCGTCTTCGTCGC
GTCACAAGAGCAGCAGCAGTAAAAGTAACAGTTCCTCCTCGTCTAAGGGC
AGCAGCAGCACTTCCGCCGGAAGTAGGTCGCGTTCGAGTCGTCAAGAAAC
CGCACCACTCCTCGCCAGCTCCGGCCCTGCTGGAGTCCCAATCACAAGGA
GTCAAAGGGATCCAAGAAGAGTTCGGCCATAGCCGCTCCTCCCGTCCGTC
GCTGCTGTTGTTAAGGAGGGACCACATCTGTGGGTGCTGCTCCGGCTGCC
TTAACATGTTCTCCTCCTCAGCACTCATCCTTGCACTTACCGCCCACTTC
CCAGGTTGGGACACGGCCTC
FMO03347.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:48:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atxn7-RD | 3380 | CG9866-RD | 374..1359 | 37..1020 | 4505 | 97.8 | Plus |
| Atxn7-RC | 3655 | CG9866-RC | 411..1396 | 37..1020 | 4505 | 97.8 | Plus |
| Atxn7-RB | 3232 | CG9866-RB | 226..1211 | 37..1020 | 4505 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:48:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2377202..2378136 | 37..969 | 4265 | 98.5 | Plus |
Blast to na_te.dros performed 2014-11-28 22:48:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6826..6882 | 704..760 | 114 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2364..2419 | 705..760 | 109 | 66.1 | Plus |
FMO03347.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:02:53 Download gff for
FMO03347.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9866-RB | 140..1133 | 26..1020 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:44 Download gff for
FMO03347.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9866-RB | 218..1211 | 26..1020 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:26:22 Download gff for
FMO03347.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atxn7-RB | 218..1211 | 26..1020 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:26:22 Download gff for
FMO03347.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2377194..2378187 | 26..1020 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:44 Download gff for
FMO03347.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2377194..2378187 | 26..1020 | 97 | | Plus |
