FMO03351.5prime Sequence
1229 bp (1005 high quality bases) assembled on 2008-07-09
> FMO03351.5prime
TATAGCATACATTATACGAAGTTATCAGTCGACATGGGCACCAATTCGGG
AGCCACCGCTGGCATAAACAACAAGCCGGTTGGCGGTGCAACAGGAGCCG
GCGTCCTTGTAGGCGGCGGTGTGGGCGGTGCCAATTCCTCGATCGGCGGT
GTCCTGTCGAACAGCCTGGGCGGTGGCGGCAGCGGCGGTCTGAGCATCAG
CGGCCTCAACGCTGGTGGACAGAACGCCAATGTGGGCGGAATGGGCAACG
TTGGCGGCGACGACGGCGGAAACGGGATGGTGGGCGGCGGTGTAAATAAC
CAGCAGGCCACAACGCCCCAATACACAATACCGGGCATCTTGCACTTCAT
CCAGCACGAGTGGTCGCGCTTCGAGCTGGAGCGATCACAGTGGGACGTGG
ACAGGGCCGAATTGCAGGCTCGCATTGCTATGCTGCTTGGAGAGCGCAAG
TGCTTGGAAAGCCTCAAATCGGATTTGACGCGCCGCATCAAGATGCTGGA
GTACGCACTGCGCCAGGAGCGTGCGAAATTCTATCGTTTAAAATACGGCA
CCGATCCGCCGCAGCTCAATGAGTTCAAGCCATCGAACGAGGATGCCGGA
CTGGCCGGTGAGGTGGCCACTGACTCGGAGGTGCCCTACAGCAGTGTCTC
GAACACTACGTGGCGGCAGGGGCGTCAGATGCTGCGACAGTATCTGGCCG
AGATTGGCTACACAGACAACATCATCGATGTGCGTTCAAATCGGGTGCGT
TCGATCCTTGGCCTAAACAATAATGCCGAGCACGACGGCAAGCGGCGGAG
GACTGGGTGGTGGACTTGGCGGCGGCACCGGCGGCGAGAACCTTAGCCTC
AAACATCAATGGAAACGAGAGCAACAAACGCGCATCGGAGACGGGAAGGG
CCGTCATACTCCCGCTAAAAAAGTGCAACAATTCGATCGATGAAATATTC
GTGGACAACCGGAGCAGCTGTGATGGCGAACTTTGAGTTCCTGGGGCGCC
ACCGAAATGTTCCGACGACGACGAGATATCTGACGATCTGGAAATGGGTG
GCCACGGACAATGACGACCAGAACGTAAGCTTGGGCAAGCCGCGCCAGGT
CTGGCAAGATAATGCTCACGAGGAGGTGAACCGCTCGTTGGACTGGGGTG
GAGCTTGGCCACTGACGTTATTACGAAATCTGGTATGGGCCCTATCAATG
CCTAACCTCTCAAGGATGTGGATCTTGGA
FMO03351.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cka-RC | 3254 | CG7392-RC | 765..1889 | 34..1167 | 5025 | 97.3 | Plus |
| Cka-RD | 3003 | CG7392-RD | 514..1638 | 34..1167 | 5025 | 97.3 | Plus |
| Cka-RB | 5135 | CG7392-RB | 318..1442 | 34..1167 | 5025 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8035817..8036295 | 414..894 | 2305 | 99.6 | Plus |
| 2L | 23513712 | 2L | 8032258..8032642 | 34..418 | 1925 | 100 | Plus |
| 2L | 23513712 | 2L | 8036357..8036571 | 899..1119 | 550 | 89.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:19:53 has no hits.
FMO03351.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:07:38 Download gff for
FMO03351.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cka-RD | 355..1479 | 34..1167 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:03 Download gff for
FMO03351.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cka-RB | 318..1442 | 34..1167 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:24 Download gff for
FMO03351.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cka-RB | 318..1442 | 34..1167 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:24 Download gff for
FMO03351.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8032258..8032641 | 34..417 | 100 | -> | Plus |
| 2L | 8035821..8036302 | 418..899 | 98 | -> | Plus |
| 2L | 8036358..8036576 | 900..1123 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:03 Download gff for
FMO03351.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8032258..8032641 | 34..417 | 100 | -> | Plus |
| arm_2L | 8035821..8036302 | 418..899 | 98 | -> | Plus |
| arm_2L | 8036358..8036576 | 900..1123 | 91 | | Plus |
