FMO03353.5prime Sequence
1241 bp (1024 high quality bases) assembled on 2008-07-09
> FMO03353.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTTCAAACGCAC
TTTTAAGGTGGTCTATCGGCCCATCAGGAGCAACTTTGTTCTGCTGCCGG
ATCAGTACTACGGCGTCGTTTCGACCTATGACACGGGCTGCCTGAGCTTG
CAGTACAATGGTCGGACGCATTACGCCTCCTGGGCGCCACAAAAGGGCGG
CGGCGGCATTAAAGACACCGAGATTGGGATCAATGCCAGAGCGGCCAAGG
AGATCGGTCTGCACGAGAATGATCTGGTCAAGTGTGCGCTCATCGCTGAC
GTTCTCAACCTGCGCAGCGTCCACGTTACCCCCGTCTCGTCCAAGGACTG
GGAGATCATAGAACTTAGCACTGAAAAGATATCGGGCAGTGTGCTGGAAC
AAACTCGCATAGTGAATTCAACGCAGATCCTTATTGTTTGGATTAATAAG
TCGATGCAAGTTGCGCTGACAGTGGATCGTCTGAAGCCGCACATGAACTA
CGGGAGAATAGATCACAATACGGAACTCGTGGTGGCGCCCAATCTGTACA
AGGGTCTGACCAATGGAACTTCAAATGGTGTTATAGAGGAAAACACAAAA
CTCTCCAGAAGTAAAACCACTGCCCAGGTCAAGGATGAGCTGACTGAAAA
GTTAACACCGTTGACCCATTCCTCCACGGTGTCCAATGTGAAAAATACTA
TTCAGCGTAACAAGCGTCAGGATCACATGGAGCGTCTTAAAAAGGACTTG
CGCCGCGAAAGCTCGCGTAGCTTCGAATTTCGTGTCATTCGAGGTCTATG
GCGGGAGCAGGCCCAGGAGTCGGATGTGTTTGTGAACGGAAGCATCTGCC
TGAGTTCTTTGATCTAGATCTATTCTATTGCATGCACACCGCAGCCGACA
AGGATTACTATGTGAGAGTGCGCACAGTAGAAGACGATATTGAGGACGAT
CTACCAGAAACCATTCATCCATCGATCGAACTAAATGCCAATCTTATGAA
GTGCTGGGTATTAAAGAATTGGAACGAGTGCTCTAGACCTAAAACTACCG
TAGTTAACTTTGTAGAAAAATGAGCTATTTGCCACCAGAAGACGCACTAA
CAAATCATGGGAAACGCATTTTAGCGTATTTGTGTATAGGACGACCCACC
ACAGTCGGATGCTCCACACCTGAGAGGGTACGGCTGAGACAGATTACTGG
TATTTGAATGTACTTACACGAACACACTTTCGTTATTGCCT
FMO03353.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex1-RA | 3275 | CG6760-RA | 77..1180 | 37..1134 | 5215 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14072931..14073589 | 475..1126 | 2865 | 97.4 | Plus |
| 3L | 28110227 | 3L | 14072135..14072263 | 130..258 | 645 | 100 | Plus |
| 3L | 28110227 | 3L | 14072759..14072873 | 361..475 | 575 | 100 | Plus |
| 3L | 28110227 | 3L | 14072381..14072486 | 256..361 | 530 | 100 | Plus |
| 3L | 28110227 | 3L | 14071968..14072061 | 37..130 | 470 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:11:43 has no hits.
FMO03353.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:27:43 Download gff for
FMO03353.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)70Da-RA | 75..1146 | 34..1099 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:06:08 Download gff for
FMO03353.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex1-RA | 75..1146 | 34..1099 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:08 Download gff for
FMO03353.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex1-RA | 75..1146 | 34..1099 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:08 Download gff for
FMO03353.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14071961..14072060 | 27..129 | 95 | -> | Plus |
| 3L | 14072135..14072261 | 130..256 | 100 | -> | Plus |
| 3L | 14072382..14072485 | 257..360 | 100 | -> | Plus |
| 3L | 14072759..14072873 | 361..475 | 100 | -> | Plus |
| 3L | 14072932..14073562 | 476..1099 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:06:08 Download gff for
FMO03353.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14065061..14065160 | 27..129 | 95 | -> | Plus |
| arm_3L | 14065235..14065361 | 130..256 | 100 | -> | Plus |
| arm_3L | 14065482..14065585 | 257..360 | 100 | -> | Plus |
| arm_3L | 14065859..14065973 | 361..475 | 100 | -> | Plus |
| arm_3L | 14066032..14066662 | 476..1099 | 98 | == | Plus |
