FMO03354.5prime Sequence
1236 bp (988 high quality bases) assembled on 2008-07-09
> FMO03354.5prime
TATAGCATACCTTATACGAAGTTATCAGTCGACATGGAGCAGTCTGTGTC
CGCCCGCTGGCTGAAGCGCTATCGCGCATTCTTCCTCATCCTGCTGCTTA
TCGTGGCCATCCAGTTGTTCCTGGCCTACAAGTCCCTGGACATCGTAGGC
GGCGGTTCCGGTTCCGGATTTGATGCGGCTGAAGCGCCTGCCAGTCCTCC
GCCTCCGCATGCTCAGGCACGGGTCCAACCGCCCGCCAGGACCAAGCTTA
CTGCCCAGCAACTGGGCTTCCAGCCAGAGTGCGACATTCTCGCCAGAGAG
GCCATCTCCGCCCTGCAGCGCGCCAAAACGAAAGACTGTCGAGAACATAT
CGCGCAGATCGCCTGCGCAATCCAAGCCGGACGCTTCTATGCGCCGCAGC
TCCGGAGCAGCTGTCCAGCTGGTAATCACACGGCGAACGTTTCTTTGGGA
TGCTTCAAGGATGAGAAAGATCGCCGCCTTCTGGCCGGCTACTACAGCAG
CTCCAAGACCTCCAATTCTCCGGCCAAATGCGTGGAGCTATGTCTGCAAA
GCGGTTACCCGTACGCAGGGGTGCAGTACGGTCGCGAGTGCTTCTGCGGT
TACGACCCGCCTCCTAAAAGCGTCGAAGCTGCCGGACTCCAGTTGCAACA
CCAAGTGCCTGGGCAACGCCAAGGAAATCTGCGGCGGATTCTATGCCATG
AACATATACGAGACCGGAATAGCCAAGTTCACCGCTCAACTGGCGGCCAC
CACTCCTTCGGAGGAAACGAAGCGCGTGCGGATCGCATTTCTGCTGACGC
TCAACGGAAGAGCGCTGCGTCAGGTGCACCGACTTCTGAAGGCGCTCTAT
GCACCGGAGCACGTTTACTAAATCCATGTGGACGAGCGCCAAGATTACCT
GTACCGAAAGCTGCTGGAGTGGAGTCAAAGTTCCCCAACATACGTTTGGG
CTCGGAAGCGATTCCTCCATCAATATGGGGGTGGAGCCTCTCTCCTGAAC
CATGCTGCTCCAGGTGCATGGAGGACCTACTGCAGGTCAACTGGCACCTG
GGAAATTGTTGAATCACCTTAGCGAAAGGTGAATTTCCCAGTGAAGACCT
TCGAACAGGTTGGTGATTTCCTTGAGCGCCAATTCCTGCAGTACCTTTGT
TAAGGCCCGGCCCGGAAACCGAAGTTCATTCAAAGCAAGCCTGAACAACA
CTTCCCCTCAGAGATGCAACACGCCACATATGTTGT
FMO03354.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:50:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| oxt-RB | 3380 | CG32300-RB | 259..1407 | 33..1187 | 5010 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:50:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2261715..2262406 | 725..33 | 3415 | 99.9 | Minus |
| 3L | 28110227 | 3L | 2261453..2261613 | 886..726 | 790 | 99.4 | Minus |
| 3L | 28110227 | 3L | 2260849..2261109 | 1155..885 | 480 | 87.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:50:20 has no hits.
FMO03354.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:07:39 Download gff for
FMO03354.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| oxt-RB | 256..1370 | 33..1158 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:25 Download gff for
FMO03354.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| oxt-RB | 259..1373 | 33..1158 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:27:30 Download gff for
FMO03354.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| oxt-RB | 259..1373 | 33..1158 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:27:30 Download gff for
FMO03354.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2261453..2261613 | 726..886 | 99 | <- | Minus |
| 3L | 2261715..2262406 | 33..725 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:25 Download gff for
FMO03354.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2261453..2261613 | 726..886 | 99 | <- | Minus |
| arm_3L | 2261715..2262406 | 33..725 | 99 | | Minus |
