FMO03355.5prime Sequence
1249 bp (766 high quality bases) assembled on 2008-07-09
> FMO03355.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGAAACCCACCCAGT
TCGGAGGCAGTAGCTCCAAGATGACCGAGCCAATTGAGTATGTGACGCTA
ATTAGCGACGATTCCGATGGTGAGCCCACGCCCAAAAGAAACGTCAATCA
CCCGCCGTCGGCATTGTCAGCACCCAATCCTGGTCAGAAACAAAAGCACC
CGGATGAGGACTCAAATGACGCACCTGCCACCAGCGATGAGCGACGCACA
AGTAGGCGCAATCGGCCAAAAGTGGATTATAGTAACAGGCCTAGTGGAAG
TGGAGACACCGCCTCCAATGACAAGTCAGGATCGGCATCCATGGGACCTA
ACAACCAGCAAGCAGAGCGTCGCAGCCAAAGCCAAACCCGCAAGTCAGAA
GCCAATGCTACCTCCTCCTCCGTGTCCGGACCCAGTGCCGGAAATTCCAG
ACCGTCCCAGAACGGAGATTCCAAGGACCGGGATGCCGGCACGCCCACGG
TTTTGTCTGGCCAAGAGGGCGCCGTCTTCCAATCTCGCCTGCCATTTAAC
AAAATGACACCCAACGAAGAGGCCTGCTTTCCGGACATCAGTCGCTCGGG
CATTCTCGGCCATCGGGTATTCCTCAACATTCGTAACAGCCTCTTGCACA
TGTGGGTGGACAATCCCAAGATCCAGCTGAGCTTCTAGATCGCCCTGAAG
AACCTGCCGCCGCCATTCGACAGCGAGCCCAGTTTGGTAAGGCGAGTACT
CTCGTTTCTGGAGCGTCATGGCTTCATTAACTTCGGCATCTTTAAGCGAC
TTAAGCCTATACCCGCCAAAAAGCTGGGCAAGTCATAGTGATTGGGGCAT
GGATCTCCGGCTTATCCGTGGCACACCATTGCAGCAGTTCGGCATGGATG
TGATCGTCTTAGAAGCGCTGGTATCGGGGTAGTGGGGACGGATATCTACG
TTTCAGAAAAATCAGCTTATATTGTCGATCGTGAGGAGCCAATGGGTAGG
TTACCGGGCGTCTATGGACATCCAAATGACCATCCTCATCAGGCAGATCG
GTATGGACCTAGTTTCCCATTCATCTTACTTGTCCCTTTTTCGGCCCAAT
GGAAGCCGGTCCGAAGGAGAAGGATGACCTGGATCGGAGATAATTTACCG
CACTCGTCTGAAATCCCCAGGCTACTGTTCCCACGGCCTTGATATTTACA
CTTCCCCGCGCATTGTCCATTCATCTCCTCTTGGTGGGGCGAGACCGTG
FMO03355.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:44:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Su(var)3-3-RB | 3615 | CG17149-RB | 370..1474 | 35..1147 | 4690 | 95.8 | Plus |
| Su(var)3-3-RA | 3681 | CG17149-RA | 436..1540 | 35..1147 | 4690 | 95.8 | Plus |
| Su(var)3-3-RC | 3555 | CG17149-RC | 370..1071 | 35..736 | 3495 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:44:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20226816..20227835 | 35..1064 | 4265 | 96.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:44:16 has no hits.
FMO03355.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:07:41 Download gff for
FMO03355.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hdm-RB | 306..1232 | 25..954 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:29 Download gff for
FMO03355.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(var)3-3-RA | 428..1354 | 25..954 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:24:20 Download gff for
FMO03355.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(var)3-3-RA | 428..1354 | 25..954 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:24:20 Download gff for
FMO03355.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20226816..20227734 | 35..954 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:29 Download gff for
FMO03355.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20219916..20220834 | 35..954 | 98 | == | Plus |
