FMO03356.5prime Sequence
1255 bp (421 high quality bases) assembled on 2008-07-09
> FMO03356.5prime
CTTCGTATAGCATACATTAAACAAAGTTATCAATCCACATGGCCGACGAA
AGTCTGCCCACCGAGCCCCTGGAGCACAACATAGACTACCACATCGTGAC
GCTATTCAAGCGCCTGGAGGCGATGCGTAAGGACTCCCACGGAGGGGGCC
ACGGGGTCAACAATCGCCTGTCCAGCACCCTGCAGGCTCCCCAGCGGAGC
ATGCAAGCTGACATTCCCACGCTGGATTTTTGGATATCCATCATCAGCGA
GTGTCTGGCCTCCTTCATGTACGTGTTCATCGTCTGCGGTGCCGCCGCTG
GCGACTGAGTGGGGGCCAGTGTGTCGTCCGTGCTTTTGGCCACAGCTCTG
GCCTCCGGCCTGGCGATGGCTACACTGACGCAGGGCTTCCTCCACATCTC
GGGCGCCCACATCAATCCCGCCGTAACCCTGGCTCTATGCGTAGTGAGAT
CCATATCTCCGATCCGGGCTGCCATGTACATAACCGCACAATGTAGCGGA
GGAATCGCCGGAGCTGCTCTGCTTTATGGCGAAACTGTGCCTGGTTACCA
AGGAAATCTGCAAGACGCCATCTCACATACCGCTGCTCTGGCCGCCTGAG
AAAAGATTCGGTGTGGAATTCATCCTCACCTTTCTGGTGGTTCTGTGCTA
TTTCATATCCACAGATCACATGAATAATTCATGGGCAATTCGGCCGCCTC
GATTGATGTGCTTACAGCGCCTGCTGCTTTTGTGTCAATGCCGTTCCTGA
ATCCGACCCGCTACCTGGGTCCTTCGGTTGTGCTTAACAAATGGGACAGC
CATAGCTTGTACTGGATCAGACCACGGAGGGGCGGCATGGCCTCTGGCCT
CGTGTTACGATATTTCTTCAACTCGCGCAACGCACCATGCGCCACACAAG
GGCATTTCACAACGATTCCCGGTCTATCACTCGACGACAAAATGAACACC
AACTGAATTAGGTACAGCCCACCAGTATACGCAGTCGCAGTGCACTTACC
CGCTTAGCCATTCAATGTATTGCTGGAGGACGCCGGTCTGGAAATAGTTT
TCACCTAGCATGGCATATTGGGCCAGATGGACAGGATAAGGGACAAGACA
GGAAAGGCATTATCGGTCATAATCTCGTGCACACTGCTCCGCCCGTCTCC
TGCTGCAAAACTACGACACCAACCCCTGGAACCCTGTAGACGGGAACTCG
TCGCTCCAGTATGGGGCGGGTGCTACACTTTGAACACAAAAAACCCTCAT
ACAGC
FMO03356.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:50:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bib-RB | 3276 | CG4722-RB | 304..1285 | 37..1010 | 3495 | 91.3 | Plus |
| bib-RA | 3276 | CG4722-RA | 304..1285 | 37..1010 | 3495 | 91.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:50:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9984948..9985145 | 37..234 | 825 | 94.4 | Plus |
| 2L | 23513712 | 2L | 9986789..9986956 | 236..403 | 780 | 97.6 | Plus |
| 2L | 23513712 | 2L | 9992254..9992456 | 529..730 | 705 | 93.1 | Plus |
| 2L | 23513712 | 2L | 9987600..9987727 | 402..529 | 610 | 98.4 | Plus |
| 2L | 23513712 | 2L | 9993267..9993410 | 738..881 | 405 | 85.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:50:45 has no hits.
FMO03356.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2008-07-09 15:07:42 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed on 2013-08-05 01:05:33 has no hits.
Sim4 to dmel-all-transcript-r6.02.fasta performed on 2014-11-28 23:27:42 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:27:42 Download gff for
FMO03356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9992255..9992462 | 530..737 | 92 | -> | Plus |
| 2L | 9984938..9985146 | 27..235 | 92 | -> | Plus |
| 2L | 9986789..9986955 | 236..402 | 97 | -> | Plus |
| 2L | 9987601..9987727 | 403..529 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:33 Download gff for
FMO03356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9984938..9985146 | 27..235 | 92 | -> | Plus |
| arm_2L | 9986789..9986955 | 236..402 | 97 | -> | Plus |
| arm_2L | 9987601..9987727 | 403..529 | 98 | -> | Plus |
| arm_2L | 9992255..9992462 | 530..737 | 92 | -> | Plus |
