FMO03357.5prime Sequence
1218 bp (1042 high quality bases) assembled on 2008-07-09
> FMO03357.5prime
GTATAGCATACCTTATACGAAGTTATCAGTCGACATGGACGAGCACACGT
TAAACGACCTGTTGGAGTGCTCCGTGTGTCTTGAGCGACTGGACACCACA
TCGAAGGTGCTGCCATGCCAGCACACCTTCTGCCGCAAATGCTTGCAGGA
CATTGTGGCCAGTCAGCACAAGTTGCGATGCCCGGAGTGCCGCATCCTGG
TCTCTTGCAAAATTGATGAGCTGCCTCCAAACGTCTTGCTGATGCGAATC
TTAGAAGGCATGAAACAAAATGCAGCAGCTGGCAAAGGAGAAGAAAAGGG
AGAGGAGACTGAAACACAGCCGGAAAGGGCCAAACCTCAGCCGCCAGCGG
AATCAGTGGCCCCGCCTGACAACCAACTACTCCAGCTGCAGTCACATCAG
CAATCTCATCAGCCGGCTCGTCACAAGCAACGTCGATTTCTACTCCCCCA
CGCCTATGCCCTCTTTGACTTCGCCTCCGGTGAAGCCACCGATCTAAAGT
TCAAGAAAGGGGATCTGATACTGATCAAGCATCGCATCGACAACAACTGG
TTTGTGGGTCAAGCGAATGGTCAGGAGGGCACATTTCCCATCAACTACGT
CAAGGTATCGGTTCCGCTGCCCATGCCGCAGTGCATTGCCATGTATGACT
TTAAGATGGGGCCCAACGACGAGGAGGGATGCCTCGAATTTAAGAAAAGC
ACTGTAATACAGGTAATGCGCCGAGTTGATCATAATTGGGCAGAAGGACG
AATTGGCCAGACCATCGGAATCTTTCCAATAGCATTCGTTGAGCTGAATG
CAGCGGCCAAAAAGCTGTTGGACAGCGGGCTACACACCCATCCATTCTGC
CAATCCACCGAAGCAACAGGGGCAGCGGGCCCTTCCTCCGGTTCCAGTAA
TTGATCCCACGGTGGTCACGGAATCCAGTTCGGGATCCTCCAATTCCACG
CCGGGCAAGCAGCAATTCCAAGCTCCACATCCAGCTCGAATAACTGCAGT
CCGAATCCACCAAATCTCACTGCGAATACCCCCACATGTAGTAGCTTCCG
GATCGGCGTCTGTCGTTTTCGGTGACAGGAAGCAAAGGAAAACGCCACTC
ATTAAAGCTTGCTTGGGAAGGAAGAGCTCATAAGTCTGCTGCCAGACAAC
CGCATTCGCTGAATCCTAGCTGCCCCAATGACTAGCCCTTGGAGATTTTC
GACTCTACACGATCTCTA
FMO03357.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:16:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| POSH-RA | 3169 | CG4909-RA | 333..1483 | 35..1177 | 5125 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:16:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17569520..17570371 | 256..1106 | 3760 | 98.1 | Plus |
| 2R | 25286936 | 2R | 17569064..17569178 | 35..149 | 575 | 100 | Plus |
| 2R | 25286936 | 2R | 17569243..17569355 | 146..258 | 565 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:16:05 has no hits.
FMO03357.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:01:20 Download gff for
FMO03357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| POSH-RA | 327..1460 | 35..1163 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:18 Download gff for
FMO03357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| POSH-RA | 333..1466 | 35..1163 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:43 Download gff for
FMO03357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| POSH-RA | 333..1466 | 35..1163 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:43 Download gff for
FMO03357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17569064..17569177 | 35..148 | 100 | -> | Plus |
| 2R | 17569246..17569354 | 149..257 | 100 | -> | Plus |
| 2R | 17569522..17570432 | 258..1163 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:18 Download gff for
FMO03357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13456569..13456682 | 35..148 | 100 | -> | Plus |
| arm_2R | 13456751..13456859 | 149..257 | 100 | -> | Plus |
| arm_2R | 13457027..13457937 | 258..1163 | 97 | | Plus |
