FMO03358.5prime Sequence
955 bp (941 high quality bases) assembled on 2008-07-09
> FMO03358.5prime
CTTCGTATAGCATACATAAAACGAAGTTATCAGTCGACATGATTCTGGAG
AATTCGGACAAGCTCAAGGATTGGCTGAGCGTGGTCCTGGAGCCACTCTG
CGATGCGGACTCCTCGGCCTTGGCGCGATATGTCATCGCGCTGCTCAAGA
AGGACAAATCGGATAAAGACCTTAAGCGGATCATGATCGAACAGCTCGAT
GTTTTCCTGTCCGAGGAGACGACACGTTTCGTTGAACGCCTCTTCGATGC
CATTGCCAGCGAGGAATACCTGACGGTCCCTGCTGCCCCTCTAATAACAG
CCTCTAGTGCATCCACCGCTGAGCTAACAGTCGACCAGGAACTGGCCCTG
GTCATTGATGGGCCCCAGGACGACATCGAAGCGGTTTTGGTTGCCGATTC
CCCTCCACCGCCTCCTAAAGATAATGTGATAAAACCCGATAGCAATCAGG
TCAAGTTAGAGCAGGCCAGTCAAGATGCCAGGGAAGCTGAGGCCCTAGCT
TTTATCAGCCAGGAAGCCGGCATTGCCATGCACGTCCCTACAGATGCCAA
GCCAGCCTTTGATCATAAAACCAAAGACTCCCACAATCAACAGTCAGCCT
CCAACTACCAACACCATCATGTGCGCAGTGCCAGCCCACCGGGCAGAAGC
AGCGGCGTCAGCGGAAGTGGAGGAGGTGGTCCCGGCGGAGCAGGTCTTGC
GGCGGGTTATGCTGACAAGGAAAAACCAGCCGCGCGACAGTCGACGACGA
CGTGCTTCCCTGCGATCCCGTTCCCGCTCTCGATCGCGTTCTAACGAGCG
CGCTTTTCGGCGGTCCAGGTCACGCGACCGACGGGTGAACGAACGCGAGA
AAACTCAACGACAATTCCGTAACAAATCTTCCACCAGGCTCGCAGACCGA
CAATTCGCCATCATGGGTCGGCGGCAACTTTTGATCCGCCGGCGGCTTCG
GTGGG
FMO03358.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| swm-RB | 4114 | CG10084-RB | 331..1239 | 38..954 | 4370 | 99 | Plus |
| swm-RA | 4005 | CG10084-RA | 365..1273 | 38..954 | 4370 | 99 | Plus |
| swm-RD | 3974 | CG10084-RD | 331..1242 | 38..954 | 4330 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19494033..19494498 | 98..563 | 2330 | 100 | Plus |
| 2L | 23513712 | 2L | 19494560..19494909 | 564..916 | 1615 | 99.2 | Plus |
| 2L | 23513712 | 2L | 19493898..19493957 | 38..97 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:19:37 has no hits.
FMO03358.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:27:41 Download gff for
FMO03358.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| swm-RA | 358..1266 | 38..955 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:57 Download gff for
FMO03358.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| swm-RA | 365..1273 | 38..955 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:15 Download gff for
FMO03358.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| swm-RA | 365..1273 | 38..955 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:15 Download gff for
FMO03358.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19493898..19493957 | 38..97 | 100 | -> | Plus |
| 2L | 19494033..19494498 | 98..563 | 100 | -> | Plus |
| 2L | 19494560..19494908 | 564..915 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:57 Download gff for
FMO03358.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19493898..19493957 | 38..97 | 100 | -> | Plus |
| arm_2L | 19494033..19494498 | 98..563 | 100 | -> | Plus |
| arm_2L | 19494560..19494908 | 564..915 | 99 | -> | Plus |
