FMO03360.5prime Sequence
578 bp (255 high quality bases) assembled on 2008-07-09
> FMO03360.5prime
GTATAGCATCTTAAGACCAAGTTATCAATCCACATGCTACATCACCAGCA
ACAATTACAACATCTGCATTGCAGAATAAAAGCTACAGCGACTACAACTG
CCCGCCTTGTGATATTCACCAGTCCTCTTCTACTATTACTACTCACCACC
CACTTGCCGCCCACCTTACAAGCGGACAATGGCCCCGCCCCCCAAGTGGC
CGCCCTTGCCGCCCCCAATCCGGCGGGTGGCGTAGCAGGGTCTTCGATCA
TCGATCAATTCAGACCAAATTGCAATGCTTTGACCCACATTTTCCAAGCG
AGAGGATTCGATGCCATCTAAATTCCCCAAAAACCCAATAACGAACAAGT
CCTACGATATTGCGAGTCCCCTTCGGTGGGCACTTGTTGCACCTACAACA
TGTAGACCCGCATGGTGATGCAATCCCGCCAGCAGCTCCAAGGGCACACC
AAAGACCAGATCTTTCGTATGTCTGGAATCCTGGGCAGCAAGGCCACAAA
TTTCAAAGATATTTTCACGGCCATGCTCAAAGAGTCGCGAACGCGGTTCA
TTATTATAGTTATCCGAACATACGGCGT
FMO03360.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dlp-RC | 3758 | CG32146-RC | 473..1017 | 34..578 | 2290 | 94.9 | Plus |
| dlp-RA | 3761 | CG32146-RA | 473..1017 | 34..578 | 2290 | 94.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14633073..14633382 | 34..343 | 1325 | 95.2 | Plus |
| 3L | 28110227 | 3L | 14664295..14664460 | 343..508 | 725 | 95.8 | Plus |
| 3L | 28110227 | 3L | 14664834..14664905 | 507..578 | 255 | 90.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:27:22 has no hits.
FMO03360.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:27:42 Download gff for
FMO03360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dlp-RA | 444..998 | 20..578 | 94 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:42:01 Download gff for
FMO03360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dlp-RA | 463..1017 | 20..578 | 94 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:53 Download gff for
FMO03360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dlp-RA | 463..1017 | 20..578 | 94 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:53 Download gff for
FMO03360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14633063..14633382 | 20..343 | 94 | -> | Plus |
| 3L | 14664296..14664460 | 344..508 | 95 | -> | Plus |
| 3L | 14664836..14664905 | 509..578 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:42:01 Download gff for
FMO03360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14657396..14657560 | 344..508 | 95 | -> | Plus |
| arm_3L | 14657936..14658005 | 509..578 | 91 | | Plus |
| arm_3L | 14626163..14626482 | 20..343 | 94 | -> | Plus |
