FMO03362.5prime Sequence
1058 bp (790 high quality bases) assembled on 2008-07-09
> FMO03362.5prime
GTATAGCATACCTTATACGAAGTTATCAGTCGACATGAATCCGAATATGT
ACGGGCCACCGCCCACGCAGTTCCAGCAGCAACCCCAGTTTGGGGCTCCT
CCTCCGAATTCCGGAGGTTGGCCACCGCAGCAACAACAACTACCGCAGCA
GCAGCCGCCGCAGCAACAACTGCCTCCGCAGCAGCAGCAACAACAACCAC
AGTACGGAGCACCACCACCAACGTCGGCGGCATCCCAGCCTTACCTCAAT
GGCAACTACCAGCAGCAGTTGGCCACGTCGATGGGAGGTTTGAGTGTGGG
TGGCGGTGTCGGTGGGGCCAATCCCCTGAAGCCACCACTCCCCCAAGGAG
CTCCCGCTGCTGCGGCACCACCGCCAACCGGTTTCAATCAGTTTAACTCT
AATGCAGCACCTCCTCCGACCAACAACAACAATGCTGCATTCGGTGCTCC
ACCACCGACGCAAGCTGGAAGTTATGTCAACGGAGCCCTACCGCCCAGCA
GTACTCCACAAAGCGTGGCCAGTGGGATTAATCAGATGAGCTTGAACAGC
GCCACTTTGGCGGGATTGCCGCACATGCCGCCACCGAAAGCGGCAACGCC
GGGAGCAGCACCTGGTCAGCCTCCGATTCCAGCAGCTGGATCTACTTCTC
AGCCGCCTCTAACCCGGACAACCGCCACTTTCCCGGACAGCCACCCCTTT
TCCGGTCAGATTCCTCACATCCCAGCCCTGCCCCAAGTCCGTATGGAGTA
CCGAGCTCACGAACGGGTCAACCCCCAGCTACCCTCCTGGAGCCACTTCC
TCCAACCTACACGCACCCGGATTGCCACCTAGCAGCAGCAAGGGAATCCG
CCCTTTGCAGCAGCAAGGGATACCACAGCTGCAGCCGGGATTTCCCCCAC
AGCTCCTGGACTGCCACCAATTATTCCAACCCGGGTTGCCTTCCGCACCA
GAACACCTTAAGGAACTTTCCAACAAGTGGAATATTAGGTGGGTTCCAGG
CAGGGTCCCGGAGGCTTCCCTGGAACACCTCCCTCCGTTTCCGGGTTCGC
AAGCAGCC
FMO03362.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sec24CD-RA | 4155 | CG10882-RA | 304..1322 | 35..1057 | 4250 | 95.4 | Plus |
| Sec24CD-RC | 4155 | CG10882-RC | 304..1322 | 35..1057 | 4250 | 95.4 | Plus |
| Sec24CD-RB | 4827 | CG10882-RB | 304..1322 | 35..1057 | 4250 | 95.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2235139..2235903 | 1032..265 | 2635 | 94.5 | Minus |
| 2L | 23513712 | 2L | 2236308..2236541 | 268..35 | 1170 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:26:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..6913 | 122..268 | 287 | 70.9 | Plus |
FMO03362.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:01:23 Download gff for
FMO03362.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10882-RA | 283..1185 | 32..941 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:36 Download gff for
FMO03362.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gho-RB | 301..1203 | 32..941 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:32 Download gff for
FMO03362.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sec24CD-RB | 301..1203 | 32..941 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:32 Download gff for
FMO03362.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2235234..2235899 | 269..941 | 96 | <- | Minus |
| 2L | 2236308..2236544 | 32..268 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:36 Download gff for
FMO03362.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2235234..2235899 | 269..941 | 96 | <- | Minus |
| arm_2L | 2236308..2236544 | 32..268 | 99 | | Minus |
