FMO03363.5prime Sequence
1257 bp (1015 high quality bases) assembled on 2008-07-09
> FMO03363.5prime
TTCGTATAGCATACATAATACGAAGTTATCAGTCGACATGGACTCGCTCA
AGTTACCAAAGGCCAACAGTGCCACCAGCAGTGCCAGCGGCAGCAACAGC
AACCTGTCCGGTTCGACTTCCGCGTCCGCATCCGCAGCCACATCGCCTAC
ATCGTCAGGAACTGCAGTGGGTGGCATTCTATCCGGTGCCCCAAAATCGC
CACCTGGCCTGGGCAGCAGCACCCCGATCTCGGTGCGATTCAATGCCAAC
GAGGAGTCCCTGGACGACATCCTACAGTCCTTCCATCACAGCAAGCATAG
TCCCAGTGGAGGAGCGAGTGGCGGCGGAGATGCCTCGCCCACATCGAATC
TGCTCGGGATGAAGAACAACGGGCTGGGATTGGTCGTGGGCAACTGTGAC
TCCCTCTCCAGCAGTCCATCGCAGCCCCAGATGCATGCCGGATCCGCATC
CCTCTTCGGCAACGACGAAGTTAGTCTGCGCAATAATTTCATGCAAGCCG
GTGGTTTCTTCAATCGAAAAAGTTGCGGTGGCCTGCCGAATCTCAATCTC
AACAAGCCGCCCCAGCTCCACCAGCAACAGCATCAACAACAGCATCAGCA
GCACCAGCAACATCAACAGCAGCAACAGCTCCATCAGCACCAACAGCAAC
TGTCGCCGAATCTGAGTGCCCTGCACCATCATCACCAGCAGCAGCAGCAG
CTTCGGGAAAGCGGAGGATCACATAGCCCCTCGTCGCCGGGTGGAGGAGG
CGGAGGATCGCCGTACAACGGCTCTCATGCGGGCTGCAGCAGCGGCGGCA
TCTCGCCCATTCCTCCCCAGATGGGCGTGTCGCCCAAATACCGTCGCAGC
ATATCCTTTCCATCAAGGGCAACTCGCCCACAGCTATCTATGGCAATATG
CACCATGGACGGCATGGGTAGTGGGCACATGAATATACCGAACACTTTCG
ATTGGAAACGGTGGGTGGTGGCCGATCTACTGGCATGGTCTCAGCCCGGA
CCACTGGTGGCCGGAAATGCGCCCTATTTGGGCAACAGCTTATGCCAACA
TGATGACGTCCAATGGAACAAATGCCACCACGGTGGCGCCTTGATTAACT
CACCTGTGCCATTATTTGCCCAACATGGTCGCTGGGTGAAATGGTGGTGC
CATGGCCGACCACAACATGTCTTAAAGCAGAATGAATGCGTGTATGGGCG
GTTCCGAAAGACATTTGAAGCAAGAGCCGTAGTCTTATGGGCCACTGAGC
AACGCAC
FMO03363.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| orb2-RB | 3116 | CG43782-RB | 421..1587 | 37..1208 | 5135 | 96.8 | Plus |
| orb2-RH | 8400 | CG43782-RH | 494..1660 | 37..1208 | 5135 | 96.8 | Plus |
| orb2-RC | 4187 | CG43782-RC | 494..1660 | 37..1208 | 5135 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8943901..8944522 | 1149..521 | 2395 | 96 | Minus |
| 3L | 28110227 | 3L | 8948883..8949281 | 460..62 | 1995 | 100 | Minus |
| 3L | 28110227 | 3L | 8947828..8947889 | 522..461 | 310 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:26:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6882 | 563..721 | 343 | 70.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2361..2517 | 550..704 | 330 | 69.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2322..2469 | 550..701 | 327 | 70.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6761..6911 | 550..701 | 316 | 68.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2427 | 574..701 | 257 | 69.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6824 | 600..701 | 212 | 68.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2835..2979 | 557..701 | 211 | 62.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1163 | 594..698 | 192 | 64.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2748..2861 | 587..706 | 191 | 64.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1055..1154 | 602..701 | 167 | 63 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6814 | 64..167 | 155 | 62.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6791 | 631..701 | 139 | 66.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6891 | 73..166 | 139 | 62.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6838 | 64..167 | 135 | 60 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6856 | 64..167 | 128 | 59.6 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3141..3309 | 527..701 | 122 | 57.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2355..2456 | 64..167 | 119 | 58.7 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 635..728 | 707..611 | 117 | 60.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2430 | 73..162 | 112 | 60 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1572 | 644..701 | 111 | 70.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2364 | 671..701 | 110 | 83.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1103..1142 | 64..103 | 110 | 75 | Plus |
FMO03363.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:01:24 Download gff for
FMO03363.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| orb2-RC | 490..1613 | 34..1164 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:38 Download gff for
FMO03363.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| orb2-RC | 491..1614 | 34..1164 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:34 Download gff for
FMO03363.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| orb2-RC | 491..1614 | 34..1164 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:34 Download gff for
FMO03363.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8943886..8944520 | 523..1164 | 95 | <- | Minus |
| 3L | 8947828..8947889 | 461..522 | 100 | <- | Minus |
| 3L | 8948883..8949280 | 63..460 | 100 | <- | Minus |
| 3L | 8949657..8949685 | 34..62 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:38 Download gff for
FMO03363.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8940928..8940989 | 461..522 | 100 | <- | Minus |
| arm_3L | 8936986..8937620 | 523..1164 | 95 | <- | Minus |
| arm_3L | 8941983..8942380 | 63..460 | 100 | <- | Minus |
| arm_3L | 8942757..8942785 | 34..62 | 96 | | Minus |
