FMO03364.5prime Sequence
1229 bp (1034 high quality bases) assembled on 2008-07-09
> FMO03364.5prime
CGTATAGCATACATAAAACGAAGTTATCAGTCGACATGATCCGAGAGAGA
ATCATCGACTTGGAGGCAAATATCGAAAGACGTTACTTGAAGCCGCCTTT
GGGCTCGCAGACAGGCGATGCCCATTTGGCGGTTATTGCTCAGAACCAGC
ATACCACCACCCAGACGCAGAACTCTGCATCGGCAGCAGCATATCTCCTG
CAGATGCAACAGCAGCAGCAGCAACAGCAGTTGGCCCAGCAGCAGCAGCA
ACAGCAACAGGGTTCGGGTGCGGGAAATAGCCTGAATCCCTCATCCTTCA
ACGAGCGTACTATGGCATTGGCGGCGGCAGCAGCTGCTTCGGGGCCAGGA
AACGCAACCGGAGTAGCCAACTCGGCAGTCGTGGCAGGAGCCACGCCCTG
CGAATCGGGCAGCGGAGAACCGAATTCCGGCAACGCGTCACCGGCCAGCA
ACTGTGACAGCGATCGGGACGAGAAGGTGGAGCAGATACCCAAGGGATTG
GTGCAGTGGCGGGACGCAGTATCCCGATCGCACACCACCGCCCAGCTGGC
GATGGCCCTGTACGTTCTGGAATCCTGCGTGGCTTGGGACAAGAGCATTA
TGAAAGCGAATTGCCAGTTCTGCACGTCCGGCGAAAACGAGGACAAGTTG
CTACTGTGCGACGGCTGTGACAAGGGCTATCACACCTATTGCTTCAAGCC
CAAGATGGACAACATTCCCGATGGCGATTGGTACTGCTACGAGTGCGTGA
ACAAGGCCACCAATGAGCGCAAGTGCATCGTTTGCGGCGGTCATCGTCCG
TCGCCCGTGGGGGAAGATGATCTACTGTGACTTGTGTCCTCGTGCCTACC
ACGCCGATTGCTATATACCGCCGCTGCTAAAGGTACCGCGTGGCCAAGTG
GTACTGCCACGGTTGCATCTCCCGGGCGCCTCCGCCGAAGAAAGAAGTGC
AGGTGGAACATCCGGCAGCAGCAGCAAATCTAGGAGGGACAGGGATAGGG
AGTCGGGGCGGATCGGCCAAGCGGCGTTAGCGACAACAGCAGAACACCAG
GCATTGGAGCCCATGCAGCAGCAGCGATTGCCACTGGGCAGGCGGGATTC
CAACATTCATCATCATAGGCAGCCGCCGTCCATGATTCCTCGACGAGTGA
GTCCATGTGATTCCTTGCGGGGTCTACTTGGAATTCGGCCACTCGGTGTT
CTCGCCACGAATCATCAGATTACACGTGC
FMO03364.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tou-RA | 10470 | CG10897-RA | 7471..8646 | 35..1211 | 5140 | 96.5 | Plus |
| tou-RG | 10721 | CG10897-RG | 7326..7899 | 35..608 | 2870 | 100 | Plus |
| tou-RF | 11743 | CG10897-RF | 6953..7526 | 35..608 | 2870 | 100 | Plus |
| tou-RG | 10721 | CG10897-RG | 8295..8897 | 608..1211 | 2275 | 93.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11583015..11583588 | 608..35 | 2870 | 100 | Minus |
| 2R | 25286936 | 2R | 11581003..11581399 | 1130..730 | 1455 | 94.3 | Minus |
| 2R | 25286936 | 2R | 11581626..11581750 | 732..608 | 625 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:37:03 has no hits.
FMO03364.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:07:43 Download gff for
FMO03364.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tou-RC | 62..1174 | 26..1142 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:53 Download gff for
FMO03364.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tou-RA | 7463..8575 | 26..1142 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:20:07 Download gff for
FMO03364.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tou-RA | 7463..8575 | 26..1142 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:20:07 Download gff for
FMO03364.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11580990..11581398 | 731..1142 | 94 | <- | Minus |
| 2R | 11581628..11581749 | 609..730 | 100 | <- | Minus |
| 2R | 11583015..11583597 | 23..608 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:53 Download gff for
FMO03364.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7468495..7468903 | 731..1142 | 94 | <- | Minus |
| arm_2R | 7469133..7469254 | 609..730 | 100 | <- | Minus |
| arm_2R | 7470520..7471102 | 23..608 | 98 | <- | Minus |
