FMO03365.5prime Sequence
1235 bp (1014 high quality bases) assembled on 2008-07-09
> FMO03365.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCCTACGTCA
ATCATTTGATTGTCAGCAATTTTTCATATTTCTGGGACGAGATCGATGGG
TTAATGTTCCCAAAGTGCCTCCCAGGAAGCCTGGCATCTAGTGTGGCATA
CTACTTTGCAACGAGGCCCGTTCCGGAACGACCGTTAGTGCCTCTGGAGA
ACCAATCGCCATTGCTAGAGGGTCCAGAACAAATACACGTCTCCAAGTTC
TACAAGGAGTCGAAGAACGGCAAGTTCGTGTCCTACATCACAGAGAATGT
CCGCACCCTGTACCAGACGTTCCGCGAGGGCGCCTACGCCTCCAACAATG
GACCATGTCTTGGCTGGCGCGAGACCCTGACCTCCCCCTACCAGTGGATC
AACTACGACGAGGCCCTGCTGCGTGCCAAGAACTTTGGAGCCGGAATGCT
GGCGCTAGGAGCCAGGCCAAAGCAGTTGATTGGGATCTACTCGCAGAACC
GCCCGGAATGGATCCTGTACGAGCAGGGCTGCTACTCCTTCTCCTTGGTG
GTGGTGCCGCTGTACGACACCCTGGGCCCCGATGCCTGCGCCTTCATCAT
ACGCCAGACGGATATGCAGGTGGTGATTGTGGAGGACGATGGCAAGGCGG
CCATGCTGTTGGAGAAGGCGCCGCGCAGTCTGAAGATCATAGTGGCTATC
AAGCCCATCCGGCAGACGACCCTGGAGCGGGCACGCAGCCGAGGCATACA
GATATTCTCATTTATCGATGTGGAGAAACTAGGTGCCAAAGGCAACCATC
CGGAGGTGCCGCCGACGGCGGAGGATCTTTGCACGGTGTGCTACACGTCC
GGGACGACGGGCAATCCGAAGGGCGTGATGCTCACCCACGGCAACGTGGT
TGGCCGGGCGTCTGTTTCTGTGATCCTGCAGAATGGGCGACCATCGCATC
CGGGGCGGGCGATGTGATGGTGTCATTCCTGCCCCTGGCCCACATGTTTC
GAGCCGTTGCTGCGAAGAATGAAATGTACTATGTGGGCGGCTGTGGTGGG
CTCTATTCCGGCGACATCAAAGGATTAACCAATGACCTCAAGATGCTGAA
ACCCAACCGTATGCCGCAGGTGCCTCGTCTTTGAACCGGCTCACGACAGA
TCCGATAATCTCTCACGCCTTGACTGAAGGTCTCTCTCATTGCCCTGCAG
GCTGAAGAGAGAAATTCCCAGGGGGGTGTTTCGTG
FMO03365.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3961-RC | 3309 | CG3961-RC | 379..1490 | 38..1138 | 4745 | 96.1 | Plus |
| CG3961-RA | 3373 | CG3961-RA | 443..1554 | 38..1138 | 4745 | 96.1 | Plus |
| CG3961-RD | 2649 | CG3961-RD | 321..1233 | 219..1138 | 4200 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18880250..18880981 | 1132..393 | 3080 | 96.6 | Minus |
| 3L | 28110227 | 3L | 18881078..18881253 | 394..219 | 880 | 100 | Minus |
| 3L | 28110227 | 3L | 18887060..18887157 | 221..124 | 475 | 99 | Minus |
| 3L | 28110227 | 3L | 18887552..18887598 | 84..38 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:42:03 has no hits.
FMO03365.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:02:58 Download gff for
FMO03365.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3961-RC | 473..1500 | 115..1148 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:14 Download gff for
FMO03365.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3961-RA | 538..1565 | 115..1148 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:46 Download gff for
FMO03365.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3961-RA | 538..1565 | 115..1148 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:46 Download gff for
FMO03365.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18880228..18880979 | 395..1151 | 97 | <- | Minus |
| 3L | 18881078..18881251 | 221..394 | 100 | <- | Minus |
| 3L | 18887061..18887157 | 124..220 | 98 | == | Minus |
| 3L | 18887198..18887215 | 84..101 | 100 | <- | Minus |
| 3L | 18887553..18887598 | 38..83 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:14 Download gff for
FMO03365.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18873328..18874079 | 395..1151 | 97 | <- | Minus |
| arm_3L | 18874178..18874351 | 221..394 | 100 | <- | Minus |
| arm_3L | 18880161..18880257 | 124..220 | 98 | == | Minus |
| arm_3L | 18880298..18880315 | 84..101 | 100 | <- | Minus |
| arm_3L | 18880653..18880698 | 38..83 | 100 | | Minus |
