FMO03368.5prime Sequence
1120 bp (752 high quality bases) assembled on 2008-07-09
> FMO03368.5prime
CGTATAGCATACATAAAACGAAGTTATCAATCCACATGTTCATCGAAGAC
GATCCTCAAATGGGCCGCTTCTGGGTGCACAGCGCTATTGGCGCGATCAA
GGCGATCGCCTTTGTCTACCACCTCATCTCCCTTCCGGTTTACTTGGTGC
TGCAGAATCCCTGGAAACGCCTTCAGGACTCGCGTCGCGTGAAGGCAAAG
ATCGTGCGGAATGATGACAATGAGCTGACCTACCGGACCACGGATCCACC
ACGGGATGTCCACGTGAAGATGCTGCAAGATTATATCGATACCCTGGAGA
AGGTATTCGCCTATGTGGCCAAAACTTACACGTCAAAACGTTGTCTGGGC
ACCCGGCACATCCTCAGCGAGGATGATGAGGTGCAGCAGAACGGTCGAGT
CTTCAAGAAGTACAACCTCGGTGACTACAAGTGGAAGACGTTCACCGAGG
CGGAGCGCACGGCGTCTAATTTCGGGCGCGGTCTGCGAGAACTTGGCCAG
AAACCACGCGAGAACATTGTCATCTTTGCCGAAACTCGAGTCGAATGGAT
GATAACTGCCCACGGATGCTTCAAGCACGCTATGCCCATTGTCACTGTCT
ATGCTACGCTGGGCGATGATGGAGTTGCTCATTGCATCACCGAAACGGAA
GTCACCACGGTTATCACCTCCCATGATCTGCTGCCCAAGTTTAAGACGCT
GCTCGACAAATGCCCATTGGTGAAGACTATTATCTATATTGAGGATCACC
TGCAAAAAACAGAAACCACTGGCTTCGAAGAGGGCGTCTAGATCTTGCCG
TTAAACCAAGTTGTCACAACGGACACGACAATAAATTTGAGCACGTTCGC
CCATGGAGATGACATTGCCTTATCATGACACTTCCGGATCCACTGGCACA
CTAAGGTGTCCTCTCTCGCACAAGACCTGCATTGCCACATGAAAGGATTT
GTGAATATAGTTGTCTATCCTATCCGGAAGAATGTACTTGATCGATGCCT
GCCCCTAGCATCACGCTATGATTTGCGCGGAAAGGGCGAGTCTCAGGACA
TGTCGTTCCAATGACTACTAACCCCTTGACTCGAATCAAACTTAAACGCA
AAATCAAACGCAAGGTGCAG
FMO03368.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:14:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Acsl-RB | 3677 | CG8732-RB | 344..1400 | 36..1082 | 3930 | 92.6 | Plus |
| Acsl-RH | 3887 | CG8732-RH | 554..1610 | 36..1082 | 3930 | 92.6 | Plus |
| Acsl-RA | 3704 | CG8732-RA | 371..1427 | 36..1082 | 3930 | 92.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:14:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8678428..8678869 | 193..634 | 2000 | 96.8 | Plus |
| 2R | 25286936 | 2R | 8678928..8679134 | 634..839 | 835 | 94.7 | Plus |
| 2R | 25286936 | 2R | 8676472..8676608 | 59..195 | 565 | 94.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:14:27 has no hits.
FMO03368.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:07:44 Download gff for
FMO03368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)44DEa-RE | 246..1177 | 36..958 | 94 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:24 Download gff for
FMO03368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acsl-RA | 371..1302 | 36..958 | 94 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:51 Download gff for
FMO03368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acsl-RA | 371..1302 | 36..958 | 94 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:51 Download gff for
FMO03368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8678928..8679134 | 634..839 | 94 | -> | Plus |
| 2R | 8674849..8674871 | 36..58 | 91 | -> | Plus |
| 2R | 8676472..8676607 | 59..194 | 94 | -> | Plus |
| 2R | 8678430..8678868 | 195..633 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:24 Download gff for
FMO03368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4562354..4562376 | 36..58 | 91 | -> | Plus |
| arm_2R | 4563977..4564112 | 59..194 | 94 | -> | Plus |
| arm_2R | 4565935..4566373 | 195..633 | 96 | -> | Plus |
| arm_2R | 4566433..4566639 | 634..839 | 94 | -> | Plus |
