FMO03369.5prime Sequence
1232 bp (1053 high quality bases) assembled on 2008-07-09
> FMO03369.5prime
TCGTATAGCATACATAAAACGAAGTTATCAGTCGACATGTCCGCGGAACG
AGAGATTCCCGCCGAGGACAGCATCAAAGTGGTCTGCCGATTCCGACCGC
TGAACGACAGCGAAGAGAAGGCCGGCTCCAAGTTCGTGGTCAAGTTCCCC
AACAATGTGGAGGAGAACTGCATATCCATAGCGGGCAAGGTGTATTTGTT
CGACAAGGTCTTCAAACCGAATGCATCCCAGGAGAAGGTCTACAATGAGG
CGGCCAAGTCCATTGTTACGGATGTCCTGGCCGGGTACAATGGAACGATA
TTCGCATATGGTCAGACGTCCTCCGGAAAAACGCATACGATGGAGGGCGT
GATCGGGGACTCCGTAAAACAGGGTATCATACCACGTATCGTCAACGACA
TTTTCAATCACATCTACGCGATGGAGGTGAACCTGGAGTTTCACATCAAG
GTCTCCTACTACGAGATCTACATGGACAAGATTCGAGATCTGTTGGACGT
CTCCAAGGTGAACTTAAGCGTGCACGAGGACAAGAACCGGGTGCCGTACG
TCAAGGGCGCTACGGAACGGTTCGTCTCGTCGCCGGAGGATGTTTTCGAG
GTGATCGAGGAGGGCAAATCCAATCGTCACATCGCTGTGACAAACATGAA
CGAGCATTCTTCGCGATCCCACTCAGTATTCCTTATCAATGTGAAGCAGG
AGAACCTGGAGAACCAGAAGAAACTATCCGGCAAACTCTACCTGGTGGAT
TTGGCCGGTTCCGAGAAGGTTTCCAAGACTGGAGCGGAGGGAACCGTTCT
TGATGAAGCCAAGAACATCAACAAGTCGCTGTCGGCCTTGGGCAACGTAA
TTTCTGCCCTGGCGGACGGAAACAAACGCACATCCCCTACCGTGATTCCA
AGCTAACGCGCATCCTGCAGGAGTCGCTGGGAGGCAACGCACGCACAACC
ATCGTCATCTGCTGCTCTCAGCCAGTTTCACGAATCTGAAACGAAGTCAA
CGCTGGACTTCGGTCGTAGAGCCAGACAGTGAAGACGTGTCTGCGTTACG
AAGAGCTTACTGCCGAGATGCAGCGACGCTATGAAGGAAACGAAGAACGC
CGACTAGGGTAGTGAAAACCTGGAAATCGACCTGCCGCTTGAAGCGGTGA
ACCGTAAGCGGAGACAATCACTTGGAGGATTCCTAGGGAGGCAAGACGCT
CTAACTTTAAATGTGAGAGCAAGCTCTTAACA
FMO03369.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:17:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Khc-RA | 3718 | CG7765-RA | 487..1545 | 37..1085 | 4980 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:17:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16269794..16270254 | 643..183 | 2305 | 100 | Minus |
| 2R | 25286936 | 2R | 16269225..16269655 | 1067..644 | 1745 | 97.4 | Minus |
| 2R | 25286936 | 2R | 16271338..16271485 | 184..37 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:17:51 has no hits.
FMO03369.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:03:00 Download gff for
FMO03369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Khc-RA | 490..1564 | 30..1094 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:52 Download gff for
FMO03369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Khc-RA | 483..1557 | 30..1094 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:44 Download gff for
FMO03369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Khc-RA | 483..1557 | 30..1094 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:44 Download gff for
FMO03369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16269192..16269655 | 644..1094 | 95 | <- | Minus |
| 2R | 16269794..16270253 | 184..643 | 100 | <- | Minus |
| 2R | 16271339..16271487 | 29..183 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:52 Download gff for
FMO03369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12156697..12157160 | 644..1094 | 95 | <- | Minus |
| arm_2R | 12157299..12157758 | 184..643 | 100 | <- | Minus |
| arm_2R | 12158844..12158992 | 29..183 | 96 | <- | Minus |
