FMO03371.5prime Sequence
1284 bp (991 high quality bases) assembled on 2008-07-09
> FMO03371.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGTCGGCACGTTCCA
GCGGCTTGGTGGCCGCGGCGGCCCTTCCCGTCCCGTCGTCTTCTTCCTCG
GTGGCCGGCGGCGACGTGCCACGCCCGCCGCCCCGCCGGCGAGCGGCCTC
TGTTGCGGGACAACAGCAAACGCGCCAGGAATTTGGAAATGGTTACACTC
CTCGCAGATCGTTGGCAGCAGTGAACGACTCTGGGGACTCGTGTCACCTG
CGAATCGTCGTACTCACCGGTCAGTCGCTGGCCAAAAAGGATATATTCGG
CGCCAGCGACCCGTATGTCAGAATCGATTTGAACACAATCAACGGTGATA
TTAATATTGACTCTGTTTTGACGAAGACCAAAAAGAAGACACTGAATCCA
ACCTGGAATGAAGAGTTCATATTTAGAGTTAAACCGTCTGAGCATAAGCT
TGTGTTTCAAGTATTTGACGAGAATCGCCTGACACGCGACGACTTCCTGG
GCATGGTGGAGCTGACCCTGGTGAATCTGCCTACCGAGCAGGAGGGTCGC
ACCATCGGAGAACAAAGCTACACTCTGCGCCCGCGCAGGTCAGTAGGCGC
CAAATCCCGCATCAAGGGCACACTGCGCATCTACCACGCCTTTATCCGGG
AGACGCGGGAGCAGAGCGAGCCATCTAGTGGCAATAGCGATGGCGAGTGG
GAGCACGTTGAGGCCACCAATGCCGGTGAGACGTCTGCCCAGCCGCACCC
CTTTCCTACTGGTGGCCACGATGCCCTACCCGCTGGATGGGAAGAACGCC
AGGATGCCAACGGGCGCACGTACTATGTGAATCACACGGCGAGGACGACG
CAATGGGGATAGGCCTACTGTCTTAAACAGCCACAGTAGCCAATCCACTG
ACGACCAGTTGGCCTCGGATTTCCAGAGACGTTTCCACATCAGCGTGGAC
GACACGGAGTCAGGACGTTCGGCGAATGAAGACACCGAATCACACAGAAA
GTCACAATCCCTCTGACATCTCAGCTCCGTCCTACCGACGCATTCCGAGG
AAGACAACGCGCTGGTGCCTCCCATGGAACAAATCTGGGGGTGAAGAGGA
ACCCCTGCACACGGCTTGGTCGATTGCGGTAGCTCTCTCACGGAAGGACA
CTTCTTCATTGATCATGCTTCGGAGAGAACATACTGGATGAACCGGGCAA
CGGACGGGCTAGCCTTATGCCAATACAACTGTAATCGACTCTGCGACTCT
GAAGGAGAGCAGAACATAACACCTGGGTATGGAC
FMO03371.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nedd4-RK | 3651 | CG42279-RK | 381..1569 | 35..1223 | 5255 | 96.9 | Plus |
| Nedd4-RG | 3942 | CG42279-RG | 381..1320 | 35..975 | 4650 | 99.7 | Plus |
| Nedd4-RJ | 4454 | CG42279-RJ | 381..1319 | 35..974 | 4645 | 99.7 | Plus |
| Nedd4-RG | 3942 | CG42279-RG | 1611..1860 | 975..1223 | 610 | 86.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17530847..17531035 | 35..223 | 945 | 100 | Plus |
| 3L | 28110227 | 3L | 17539567..17539736 | 428..597 | 835 | 99.4 | Plus |
| 3L | 28110227 | 3L | 17540690..17540838 | 597..745 | 745 | 100 | Plus |
| 3L | 28110227 | 3L | 17540901..17541026 | 745..871 | 585 | 99.2 | Plus |
| 3L | 28110227 | 3L | 17541301..17541403 | 872..974 | 515 | 100 | Plus |
| 3L | 28110227 | 3L | 17538811..17538895 | 304..388 | 425 | 100 | Plus |
| 3L | 28110227 | 3L | 17538661..17538744 | 223..306 | 405 | 98.8 | Plus |
| 3L | 28110227 | 3L | 17543504..17543612 | 974..1082 | 330 | 90.9 | Plus |
| 3L | 28110227 | 3L | 17539454..17539496 | 387..429 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:17:47 has no hits.
FMO03371.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:27:19 Download gff for
FMO03371.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nedd4-RC | 372..1572 | 27..1228 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:07 Download gff for
FMO03371.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nedd4-RK | 374..1574 | 27..1228 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:08 Download gff for
FMO03371.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nedd4-RK | 374..1574 | 27..1228 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:08 Download gff for
FMO03371.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17530840..17531035 | 27..223 | 97 | -> | Plus |
| 3L | 17538662..17538744 | 224..306 | 98 | -> | Plus |
| 3L | 17538814..17538895 | 307..388 | 100 | -> | Plus |
| 3L | 17539456..17539494 | 389..427 | 100 | -> | Plus |
| 3L | 17539567..17539736 | 428..597 | 99 | -> | Plus |
| 3L | 17540691..17540838 | 598..745 | 100 | -> | Plus |
| 3L | 17540902..17541026 | 746..871 | 99 | -> | Plus |
| 3L | 17541301..17541403 | 872..974 | 100 | -> | Plus |
| 3L | 17543505..17543612 | 975..1082 | 92 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:07 Download gff for
FMO03371.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17523940..17524135 | 27..223 | 97 | -> | Plus |
| arm_3L | 17531762..17531844 | 224..306 | 98 | -> | Plus |
| arm_3L | 17531914..17531995 | 307..388 | 100 | -> | Plus |
| arm_3L | 17532556..17532594 | 389..427 | 100 | -> | Plus |
| arm_3L | 17532667..17532836 | 428..597 | 99 | -> | Plus |
| arm_3L | 17533791..17533938 | 598..745 | 100 | -> | Plus |
| arm_3L | 17534002..17534126 | 746..871 | 99 | -> | Plus |
| arm_3L | 17534401..17534503 | 872..974 | 100 | -> | Plus |
| arm_3L | 17536605..17536712 | 975..1082 | 92 | -> | Plus |
