FMO03372.5prime Sequence
1261 bp (679 high quality bases) assembled on 2008-07-09
> FMO03372.5prime
TTCGTATAGCATAATAAAACGAAGTTATCAATCGACATGGCCCCAGCGAA
AAAACGCGAAAAAGACAGTAATCCGGATGGTTCTGCCGCAAATGGCATTA
TTGGCCTCACCCATGGAGCACCGGACGCGAGCAATGCTGGCTCTACTGTA
CCGCCGACGGCCGAGGGTCAGGTCAAACTCAATGGCCACCAGCAGGAGCA
GGAACTCTTTTTGCAGGCCTTTGAGAAGCCCACGCAGATCTATCGCTACC
TGCGCAATCGACACGAGACAAACCCCATCTTCCTCAACCGCACGCTCAGC
TACATGAAGGAACGGATGTCGCGGAACAACAAGAAGCGGATCAGCTTCCA
GGTAAACTCCATGCTGGAGAGCATAACACAAAAGTCGGAGGCGGTGAGCC
AGAACTACCTGCACGTCATCTACGATTCGCTGCACGAGAAGTTGCCGGCG
AGGTTGGACAACGAGTCTGGCGAGGATTTGCTGCAGGAGCAGCTGCTCTG
CGAAGCGGGCGAGTCTGTGAGTGTGGAGACAACGCTGTACAAGATCACAC
GCAACAAGCGAAAGGACACCACGCTGGACTTTCAAGAGCTGCTCAGCAAG
TGCTCGCAGATCGTGTACAACCCAAAGGATCGTGTGGGAGAACATGCCAC
CATCAGCATTCCTCTCCAGACGATGCGCCCAATGGGTGAGCAGCACACAC
TGTACAAGCTGCTATTTCGCATCAGGTGCTGTCGCCAAGTACGTGCATGA
TGAGAATGCAAAACTCCACCGAACAAGCGGTCGCGTCCAAATGATAAAAT
GTTCGGATCGGAACTGATATTGTACGAGAAGTCCGGCGGATTCATAACCG
AAGGCGAGTACCAGGCCATGCTGCAGCCTCTTAATTCCACCAGCATCAAG
TCCTTCTCACCAAAGAAATGCATATGGGGAACGATGCCGGATAGCTACAT
TCCACTCCTCGTGGACTACTACGTCTACCAGCCGAGTCCCATGCTCAGTT
CTGTCTGACCGCTAATCCATGGACAGCTGCTCGAAATGATTTCCGCCTCC
GGAGCTGCATCGTATTGTATCATACTATTGAATGCGGAGGCCGAGATTAA
CCTACATACGCAATACTTACGATATTACAACAACTGCCGCGGTATACGAA
TTGCTACGGCCGGAGACAAAAGCCCGGGGGTCTAGACTCACCTGGAATAC
AATTCGAATCTGGTTACACACTTCATGTTAACGCGATATATTAACCAGTA
CTAGCAGCATG
FMO03372.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:27:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Su(z)12-RB | 3936 | CG8013-RB | 475..1580 | 37..1142 | 4660 | 95.5 | Plus |
| Su(z)12-RA | 4098 | CG8013-RA | 475..1580 | 37..1142 | 4660 | 95.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:27:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19921968..19922456 | 760..274 | 2300 | 99 | Minus |
| 3L | 28110227 | 3L | 19921603..19921904 | 1063..761 | 1025 | 91.4 | Minus |
| 3L | 28110227 | 3L | 19922799..19922988 | 226..37 | 950 | 100 | Minus |
| 3L | 28110227 | 3L | 19922685..19922731 | 273..227 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:27:46 has no hits.
FMO03372.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:27:20 Download gff for
FMO03372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(z)12-RA | 408..1449 | 30..1072 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:57 Download gff for
FMO03372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(z)12-RA | 470..1511 | 30..1072 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:15:13 Download gff for
FMO03372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(z)12-RA | 470..1511 | 30..1072 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:15:13 Download gff for
FMO03372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19922685..19922731 | 227..273 | 100 | <- | Minus |
| 3L | 19922799..19922987 | 32..226 | 96 | <- | Minus |
| 3L | 19921595..19921904 | 761..1072 | 91 | <- | Minus |
| 3L | 19921967..19922456 | 274..760 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:57 Download gff for
FMO03372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19914695..19915004 | 761..1072 | 91 | <- | Minus |
| arm_3L | 19915067..19915556 | 274..760 | 98 | <- | Minus |
| arm_3L | 19915785..19915831 | 227..273 | 100 | <- | Minus |
| arm_3L | 19915899..19916087 | 32..226 | 96 | <- | Minus |
