FMO03374.5prime Sequence
1240 bp (11 high quality bases) assembled on 2008-07-09
> FMO03374.5prime
CGTATAGCATACCTTATACGAAGTTATCAATCCACATGGCAGCAACCGTT
TACCAACGCCTACGTCTCGTCACAGTCGGCGTCGGCAGCGGCGCTGGCAA
CGCCATCGGCAGCGGGTCGGCTTCCCTTCCACGATCTGGAACGGGATCGG
GATCTGGAATAGGCCTCGCTGGAAACACCTCCTCCTCCCCCTCGTCTGCC
CTGCTTATTCTTTCCCATCTGACTCGCTCCCTGGAAAGAATCCTGGAAGA
ATCGCACTTCAACGGCGAACTGGTCCTGACCAATCCCAAGCTGAAGGACT
TTCCCACGACTGGAACGAATTACTCACTTACCGACACTGTCTTCGCATAT
CTTTCCCGGAATAGATTTGCCAAGCTGCCCGAAGAAGTGACTACGTTTGC
CTTCCTAGAGACCCTGCTACTGTATCACAATACGATTCGCAGGATTCCGG
AATCGGTGAAGCAGCTATCATCGTTGACCTATTTATATTTGCGCAACAAT
CAGTTGTCCTCGCTGCCACGCGAGATTTGTTTCCTGCCTCTTCCTGTTCT
GCTGGTTTCCAAAAATCGATTGACTTCGTTACCAGATGAACTGGGTCGAT
TGGATCATACACTGACCGATCTGGATGCTTCCTATAATCAGTTGGACAAT
CTACCCGCTCGGCAGGGTGAGCTAAGATCCCTGCGCTCGCTCTCGTTGAT
AAGCAATCGCTTGCTGTATCTGCCCAAATAGCTTACCTGTTTGAGTTTGA
TATCACTGGACGTGAGCAACAACAAAATCTCTAGCCTGTCTCTCGAGATT
CGTCTCATGAGCACTTTGATATAGCTTCAGCTAGAGGACAATCCTCTGAC
CTCGCCTCCATCAACCTATGCCTGCGCGGCCTGGTGCACGTGTTCACGTT
TTTCGTAAACGCACGCCTTCACGGACTAAAAGGGATCTCGGTATAGTGAC
ACCTACGATGAGTATATTTCCTTAGCGAAGAGCTCCTCGACTCATTTCAG
CAGCAATGTTCTTGCAGCTAGCACCTGTGGCATTCACTACACCAGTGGAG
TCATTTAGTTCGACATGAGTTATAAACAGCGATGGATTGAAAAACGCATG
GTCGAGAGATCTACTATCTAAACTGGATCCCTGCTGCATGTGTTTCATTT
CACAGCCGCTCACTTGGCCAGTATCGTTGCTGAAGCGTTCCTATTCTAGC
GGAACGATTGACATTCCTTATACTCCCTCCGACTATGCTG
FMO03374.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:00:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lrch-RC | 5650 | CG6860-RC | 334..1389 | 36..1089 | 3775 | 91 | Plus |
| Lrch-RB | 4427 | CG6860-RB | 334..1389 | 36..1089 | 3775 | 91 | Plus |
| Lrch-RA | 3449 | CG6860-RA | 334..1389 | 36..1089 | 3775 | 91 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:00:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17374233..17374748 | 864..349 | 2205 | 95.2 | Minus |
| 2L | 23513712 | 2L | 17383471..17383782 | 347..36 | 1230 | 92.9 | Minus |
| 2L | 23513712 | 2L | 17373991..17374156 | 1032..866 | 285 | 82.1 | Minus |
Blast to na_te.dros performed 2014-11-28 23:00:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HMS-Beagle2 | 7220 | HMS-Beagle2 Beagle2 7220bp | 144..196 | 120..68 | 112 | 67.9 | Minus |
| HMS-Beagle2 | 7220 | HMS-Beagle2 Beagle2 7220bp | 7027..7079 | 120..68 | 112 | 67.9 | Minus |
FMO03374.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2008-07-09 15:03:02 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed on 2013-08-05 01:12:13 has no hits.
Sim4 to dmel-all-transcript-r6.02.fasta performed on 2014-11-28 23:46:45 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:46:45 Download gff for
FMO03374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17383470..17383782 | 36..348 | 92 | | Minus |
| 2L | 17374119..17374156 | 866..903 | 94 | <- | Minus |
| 2L | 17374231..17374748 | 349..865 | 94 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:13 Download gff for
FMO03374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17383470..17383782 | 36..348 | 92 | | Minus |
| arm_2L | 17374119..17374156 | 866..903 | 94 | <- | Minus |
| arm_2L | 17374231..17374748 | 349..865 | 94 | <- | Minus |
