FMO03378.5prime Sequence
1242 bp (963 high quality bases) assembled on 2008-07-09
> FMO03378.5prime
CATACATTATACGAAGTTATCAGTCGACATGAGCGCCTCCGCGGAGCAGG
AGACGGCTCCCATAGCTAATTCCCGTAGTGGTCGTACGGGCAGTGTTTTC
CGCAGTTTCGGATCTTTATTCGGCGGCAGCCAAAACAGTGGCGATCGCCC
CCACACCCCGCAGGATGGCGACGGATATGTGGAGTTCGGAATGCAGGACC
CGGATCGTAGTGGCCGTACGCTCGGTACCTTTGCCGGAGTTTTTAGTCCA
GTGGCTTTGTCCATGTTTAGTGCTTTGGTCTTCATTCGAGTCGGGTACAT
CGTCGGAAATGCGGGCCTGTATGTAACCCTGCTGCAGTTCCTCATCGCCT
ACGGAATTCTGCTCTTCACGGTGGCTTCGGTCTGCGCCATTTCCACCAAT
GGAGCCATCGAGGGAGGGGGAGTTTATTTCATGATTAGTCGAACGCTGGG
ACTGGAGTTTGGTGGCTCGATCGGAACCCTCTTTTTCTTTGCCAATGTGG
TGGGATCTGCAATGGCCATATCCGGCTGCACTGAGGGCATCATGGATAAC
TTCGGACCGCGTGGCCATTTTGTGAGCGGGGACTCCCACCTACCGGATGG
GGATTGGTGGCGTTTCCTTACCAGCAGCATGATAAACACCCTGCAACTGC
TGGTTTGCCTGGTGGGCGCCGCTCTGTTCGCCAAGACGTCAGTGATTATT
TTGGCCACCGTCACCGTTTGCCTGTTTCGCCACTTACTTTAGTTTTCTAT
TTGTGGGCGCCACCAATAACACGATACCCGTTCCTGGGGACAATATTTTA
TCGAATACCACAAATTTTCTCGACTATACAGGGCTGAAATGCCACAACGC
TGCGGGATAATCTAGGATTCCCACTACGGTCGCGATTACACGTCGAATGG
CCAAACAAGTCGATTTCTCCACCACCTTCGGTGTGCTGTTTTCCCGGAGT
CACTGGAATAATGGCGGGAGCGAATAATGTCCGGAGAACTGAAGAACCCA
ATCAAAAGAGATATTCCTTATGGGCACTCTCTCGGCAGTGGCGTTTACCT
TTCGTCTCCTAACATCATTCTGTCCTTCCTCATGGAAGCTGCCACAACTT
CGGTAACTTAACCATGCAAAACATTACCTGTTCCTGATGACCAGTATCTG
GCCTTCATTTACGTAATCGGATTGGACCGCCCACTTTTCACAATCTGAAC
CATTCTGATTGATACCACAAGAGTATACTGCGGAGGAGAGTC
FMO03378.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10413-RB | 4010 | CG10413-RB | 325..1503 | 24..1211 | 5030 | 96.1 | Plus |
| CG10413-RA | 3783 | CG10413-RA | 98..1276 | 24..1211 | 5030 | 96.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18603707..18604050 | 773..429 | 1675 | 99.7 | Minus |
| 2L | 23513712 | 2L | 18604655..18604925 | 294..24 | 1340 | 99.6 | Minus |
| 2L | 23513712 | 2L | 18602577..18602877 | 1084..773 | 960 | 93.9 | Minus |
| 2L | 23513712 | 2L | 18604433..18604568 | 428..293 | 680 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:37:27 has no hits.
FMO03378.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:07:46 Download gff for
FMO03378.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10413-RA | 95..1207 | 21..1149 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:03 Download gff for
FMO03378.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10413-RA | 96..1208 | 21..1149 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:20:19 Download gff for
FMO03378.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10413-RA | 96..1208 | 21..1149 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:20:19 Download gff for
FMO03378.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18602499..18602876 | 774..1163 | 91 | <- | Minus |
| 2L | 18603707..18604050 | 429..773 | 99 | <- | Minus |
| 2L | 18604433..18604567 | 294..428 | 100 | <- | Minus |
| 2L | 18604656..18604927 | 21..293 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:03 Download gff for
FMO03378.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18602499..18602876 | 774..1163 | 91 | <- | Minus |
| arm_2L | 18603707..18604050 | 429..773 | 99 | <- | Minus |
| arm_2L | 18604433..18604567 | 294..428 | 100 | <- | Minus |
| arm_2L | 18604656..18604927 | 21..293 | 99 | | Minus |
