FMO03380.5prime Sequence
867 bp (839 high quality bases) assembled on 2008-07-09
> FMO03380.5prime
GCATACCTAATACGAAGTTATCAGTCGACATGCTACCCAAACTAAAAATA
TCCGCATTCCTGTTGAAGCGCCTGGAGCGAACAAAGCAGCAGTGCAGTGG
ATGCTTGTTTGGAGTTTTCTATGGAGAAGGTACCTTACTCCTACTGAGCT
TCAACATTGAGTCCAGTTTGGGACAACTGAACTACGAGCAGATCCAACAC
AGATTCCCGGCGGAACTGGATTTATGCGGACTGGTCAAGTTTGGTGGTTG
CACCGATGGAGAGGCGCACCTTAATGAGGTCATCAAATCTGTGGATATCA
CCGATAATCCCATCCTACTGCAATGCGAATTGGGCACCTTGGTGGGCTTG
CGGGCCTCGTTTTTCGTCCATGGAAAACTGGAGGAGGTACCCTACGAGGT
TATGGAGGCACATCAGCCGTACAACGACTTCTGCTTCACCCGGCTGCAGT
GCGGATTCTTTCTGCAAACGGCCGCCACACCGGAATCCGTGGCCCGGGAA
ATGCATGTGCTGCGCAAAAGGGTAGCCGACGGAAATCTAGTGTTTAACGT
TCCGCAGACAAAGATTTTCATTAATAAACTACGGGCCACTGGACAAACAG
TTTTAGCGGCGATTCCCAAATTCAGGATCTTATAGACGTCATTCCAACTC
CAGGACATGAAAAAGGAGACTGCCAGTGTCGACAAAAAGAAGCTTAAAAG
GTCAGAACACGCCAGTCAAGAGACTGGCTCCGACTGACTGCGACTACGAG
GTGATCCCCATCGATGTGATGCGCTCGCGCAGTCTGATCCCGTGTCCGGA
GAGCCACCTCATCCGGCACTCAGCTTTGCTGTGACCAATGAAGGACCCGA
TCCCGAGTCCAGGTACC
FMO03380.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16979-RA | 2046 | CG16979-RA | 95..927 | 30..867 | 3945 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15576760..15577531 | 67..841 | 3585 | 99 | Plus |
| 3L | 28110227 | 3L | 15576664..15576702 | 30..68 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:11:07 has no hits.
FMO03380.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:01:54 Download gff for
FMO03380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16979-RA | 88..931 | 18..867 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:05:40 Download gff for
FMO03380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16979-RA | 84..927 | 18..867 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:46 Download gff for
FMO03380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16979-RA | 84..927 | 18..867 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:46 Download gff for
FMO03380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15576668..15576702 | 34..68 | 100 | -> | Plus |
| 3L | 15576762..15577555 | 69..867 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:05:40 Download gff for
FMO03380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15569768..15569802 | 34..68 | 100 | -> | Plus |
| arm_3L | 15569862..15570655 | 69..867 | 98 | | Plus |
