FMO03381.5prime Sequence
1238 bp (1018 high quality bases) assembled on 2008-07-09
> FMO03381.5prime
CGTATAGCATACATAATACGAAGTTATCAGTCGACATGGCAGCAGCCACA
TGGAGCTGGCTGTTGGCCCCATTCCTGCTCCTCCACTGGGCCAGTGCAGG
AGCGGGCGGAGGAGCAGGCGGCTCGGGAGCGGGACTGAGCGGCCCCGCCG
TCTTTACCAGCTCCTTCCTGGTGCGCTTCCGGCGCGGAGTGGACAACTCG
TTTGCCCATGATGTGGCCGACAAGTACGGCTTCGACAACCTAGGCCCGCT
GGTCGGCGCCGATGGACACGAGTATCATTTCAAGCACCGGACCCTTCCAC
ATGCCCGCTCCAGGAGGAGTCTGACGCACACACGGGCCCTCAAGAGCCAT
CCGGCGGTGCATACGGCCGTGCAACAGCCGGGATTCAAGCGGGTTAAACG
TGGCCTGCGGCCGGCGGTGCCCGCCATTCACGGCATGAAGTTCGACCTGA
AAGTTGGCGAGGGCAATCGGATTGACGAGGAGCCCACTGACCCCTACTTT
CCCATGCAATGGTACCTCAAGAACACGGGTCAGAATGGCGGCAAAGTCAG
GCTGGATCTGAATGTGCAGGCTGCCTGGGCCCAGGGAATCACCGGGAAGA
ATGTTACGACGGCCATCATGGATGATGGCGTGGACTACATGCATCCGGAT
CTGAAATTCAATTATAACGCCGAGGCCAGTTATGACTTCAGCAGTAACGA
TCCCTTTCCGTATCCCCGATACACCGACGACTGGTTCAACAGCCATGGAA
CTCGTTGTGCCGGCGAAGTGGCTGCTGCCAGAGATAATGGAATTTGCGGC
GTTGGCGTTGCTTATGACAGCAAAATCGCAGGCATTCGCATGCTGGATCA
GCCGTACATGACGGACCTAATCGAGGCCACTCCATGGGCCACGAGCCGCA
CAAAATCCACATATACAGCGCCTCCTGGGGTCCCACCGATGATGGCAAGA
CCGTGGACGGTCCCCGGAATGCAACCATGCGAGCGATAGTCCAGGGCGTC
AATGAGGTCGAAATGGCCTGGCTACATCTATGTTTGGCCATCCGGCGACG
GCGGCGAAGAGGATGACTGCAATTGTGACGGCTAACCCGCCTTCCATGTG
GGACATTCATTTAACAGTGCCATTAACGACTCAGAACGCCCCATTCAAGA
CGAGAGGCTGCAGTCCGCTGCGTCCATCGACACGGACCAAGGACTCAAAC
CGGGGCGTGGTCGCCACATCCACACGGAAGCCCTCTAT
FMO03381.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:50:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| amon-RA | 3991 | CG6438-RA | 436..1566 | 35..1163 | 5240 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:50:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26702601..26702873 | 628..356 | 1365 | 100 | Minus |
| 3R | 32079331 | 3R | 26713511..26713724 | 248..35 | 1070 | 100 | Minus |
| 3R | 32079331 | 3R | 26700810..26700990 | 1008..829 | 840 | 98.9 | Minus |
| 3R | 32079331 | 3R | 26703712..26703823 | 359..248 | 560 | 100 | Minus |
| 3R | 32079331 | 3R | 26701515..26701607 | 832..740 | 465 | 100 | Minus |
| 3R | 32079331 | 3R | 26701948..26702024 | 742..666 | 385 | 100 | Minus |
| 3R | 32079331 | 3R | 26700615..26700740 | 1130..1006 | 350 | 90.6 | Minus |
| 3R | 32079331 | 3R | 26702474..26702512 | 665..627 | 195 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:50:05 has no hits.
FMO03381.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:27:25 Download gff for
FMO03381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| amon-RA | 434..1547 | 31..1141 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:20 Download gff for
FMO03381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| amon-RA | 434..1547 | 31..1141 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:27:21 Download gff for
FMO03381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| amon-RA | 434..1547 | 31..1141 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:27:21 Download gff for
FMO03381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26701516..26701604 | 743..831 | 100 | <- | Minus |
| 3R | 26701948..26702024 | 666..742 | 100 | <- | Minus |
| 3R | 26702474..26702511 | 628..665 | 100 | <- | Minus |
| 3R | 26702602..26702872 | 357..627 | 100 | <- | Minus |
| 3R | 26703715..26703822 | 249..356 | 100 | <- | Minus |
| 3R | 26713511..26713726 | 31..248 | 99 | | Minus |
| 3R | 26700812..26700987 | 832..1006 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:20 Download gff for
FMO03381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22526534..22526709 | 832..1006 | 98 | <- | Minus |
| arm_3R | 22527238..22527326 | 743..831 | 100 | <- | Minus |
| arm_3R | 22527670..22527746 | 666..742 | 100 | <- | Minus |
| arm_3R | 22528196..22528233 | 628..665 | 100 | <- | Minus |
| arm_3R | 22528324..22528594 | 357..627 | 100 | <- | Minus |
| arm_3R | 22529437..22529544 | 249..356 | 100 | <- | Minus |
| arm_3R | 22539233..22539448 | 31..248 | 99 | | Minus |
