Clone FMO03383 Report

Search the DGRC for FMO03383

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:33
Well:83
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG31619-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO03383.5prime Sequence

1245 bp (135 high quality bases) assembled on 2008-07-09

> FMO03383.5prime
GCATACATTATACGAAGTTATCAATCCACATGTCGGTGAACATGAACTGG
ACGTCTCCAAAAATATGGGCCGCTTTGTTTGTGACCACCCTATGCCTGTT
GGATACACGGGCCGCCTGGGCAAAAAAGCTAAATGCGAGTCAAGCTTTTG
ACCACACGTGGAACACAGCATCCGATTTGGAAAATGAACTGGAACAACAA
AAGCGATCGAATGTCCAAAGTGCAGGAGGAGGAGGTGGCGCGGGCGGCGG
ACCTGACCAGTGGTCGGCCTGGTCTGATTGGTCAACCTGTTCGCACACCT
GCGACGGAGGCATCATGCATCAAATGCGTAGGTGCGGCAGTCCTGTGCCT
TGTCGCGGGGAGAGCACCCGCTACCGCATTTGCAACTTGCTCCCTTGTCC
GGAGCACCACGACTTCCGCTCCGCCTATGCTCCGCCTACAACGATGTTCC
CTACCATGGCACCCTGTACAAGTGGACTCCGCATTATGATTACCTCGAGC
CCTGCGCGCTTACATGCACAGGACATCCTGCACATCTTGTCGAAGACATT
TCGCGGGAGACTGGAGACGGCAATGCAGATGAGGCTGAGCACTACGACAA
GCAGAGCGTCATTGTGCAATTGTCTGCGAGGGTGCCAGACGGAACCCGTT
GTCGTTCCAGCAGCCTAGATATGTGTATCCAAGGAAAGTGTCAGCGTGTT
GGCTGCGATTTAAAAATCGGATCTACAAAAAAAATCTACGGCTGCGAATG
TGCGGCGGAAATGGAAACTCCTGCTCCCCACTGCTTTTTTATCTGGGAGA
TGGCACCGATGTCAACTGCTCTGTAACCTGTGGAAGCGGTTCCATATGTC
CCGTTCAATATGCAGGAATCGCCTACCCACGCCAATGTCCATGATACCCT
CTGCATCGTTATTTAATCGGTCGGGAGGCGTCGTGGAACATGAAATACTA
AAGATTATTCCTTCCCGGTGGATAACAGACAATTGCAGCACTTGCAAACC
GCCATTTGTAGTCCAGCTTCTGGGACCTATTGCTGGCCTGTTGCTGAAGT
AATTCTAAAGTCTATCATGACGATGGTAGACAGATTTACATGTAACGACT
CAAACCAAACACGAAAACAAAAATACTTGTTCTATTATCATGCAGGTTCC
TCTGGCATGATGCAAAACTTGAACCGTTTTTCGATTCTTTGGAAGGCTAT
TATCAACGTTGTGGCCCGAAGCCAAATTATATAATCACGGCAAGC

FMO03383.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:14:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG31619-RE 5688 CG31619-RE 626..1610 30..1013 3745 92.8 Plus
CG31619-RD 5477 CG31619-RD 433..1417 30..1013 3745 92.8 Plus
CG31619-RG 5351 CG31619-RG 433..1417 30..1013 3745 92.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:14:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21700855..21701179 195..518 1290 93.8 Plus
2L 23513712 2L 21701764..21701938 520..694 800 97.1 Plus
2L 23513712 2L 21700671..21700782 83..194 515 97.3 Plus
2L 23513712 2L 21704457..21704605 693..840 465 92 Plus
2L 23513712 2L 21688499..21688552 30..83 270 100 Plus
2L 23513712 2L 21710572..21710638 846..911 195 89.6 Plus
Blast to na_te.dros performed on 2014-11-28 22:14:17 has no hits.

FMO03383.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:27:23 Download gff for FMO03383.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31619-RC 397..1386 22..1013 92   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:19 Download gff for FMO03383.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31619-RG 428..1417 22..1013 92   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:48 Download gff for FMO03383.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31619-RG 428..1417 22..1013 92   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:48 Download gff for FMO03383.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 21701764..21701938 520..694 97 -> Plus
2L 21704459..21704603 695..838 91 -> Plus
2L 21700855..21701180 195..519 93 -> Plus
2L 21688494..21688552 22..83 93 -> Plus
2L 21700672..21700782 84..194 97 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:19 Download gff for FMO03383.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21688494..21688552 22..83 93 -> Plus
arm_2L 21700672..21700782 84..194 97 -> Plus
arm_2L 21700855..21701180 195..519 93 -> Plus
arm_2L 21701764..21701938 520..694 97 -> Plus
arm_2L 21704459..21704603 695..838 91 -> Plus