FMO03384.5prime Sequence
1221 bp (1033 high quality bases) assembled on 2008-07-09
> FMO03384.5prime
TTCGTATAGCATACATAATACGAAGTTATCAGTCGACATGTCGAGCGGTC
AGCAATTGATGGCCGATTCGCCAGCCTGCAGCTCAAGTGACCATTCGCCG
CTGGCCAAAAAAAGGCGTTTAGAGTTGTTGGGTGACGGAGTGGGGGCAAT
GGGAATGGAAGAGGAAGAAGCCGGCGGAGCAACGAGCAGCAGTAGCAGCA
ACAACTACGAAAATCACGACAAAGCAGGCGGCGTTGACATTTCGGGCAAG
TGCCAGAGCAAGACGACTAGCGAGCACCAGCTGGAATTGTGCGTATCGTC
GTCTACCTCTGACACATGCGGCGTTAATGCTGCGGCGAAGCGAGCCGAAA
AGCAGAAACTGAAACAGAGCCAAGGAAGCGGCGACGACGTTAGTACCTCG
TCAGCAGTGGAAAAGGAAGGAAGCAAGCGGCCGGAGAAGCGCAATTACCT
GAACACCACCACAATAGAATCGCAAGAAGCCTCCTCCAGTGCATCCGCCA
CTAGCAACAGCAACAACAACGTCAGCTCCAGCAACAATAACAGTAATAAC
AGCACTAATAACCGACAACTGGAAGGAAGCAGCAACATGGCTGGAAACAG
TGCCGCCGCCGGCGGAGATATCGATGAATCGCTGTACTCGCGCCAATTGT
ACGTCCTGGGTCACGATGCGATGCGTCGGATGGCCAATTCGGATATCCTT
CTGTCGGGACTTGGAGGACTCGGCCTGGAGATAGCCAAGAATGTGATTCT
GGGCGGCGTGAAAATCGATCACCTTGCATGACACAGCAACTTGTGGGCTC
CATGACTTGTCGTCGCAATTCTATCTCACGGAAGCCGATATCGGCAAGAA
TCGTGCGGAGGCCTCTTGCGCCCAGTTGGCCGAGTTAAACAACTATGTGC
GCACCGTTTCGCACCACGGGGCCGCTTACCGAGGAGTTCCTGCGCAAGTT
TCGCGTTGTGGTACTGACCACTCCGACGGGGAAGGAGCAGCAGAGGATCG
CCAAGTTTGCCCATGAAAATGGCATGCTCTGATCATCCGCGAGACCGCGC
GGACTGTCCGCCAAAGGTGTTCTTGTGACTTTGCGAGAAGCTTTACATTA
CGATCAGATGCACCCAGCCGATCCTCCACCATGATAGCTAGTATCACGGC
ACGACGCAAGGGAGTGTCACTGACCTGAACAAACGCGCCCAGGTATTAAT
GACGGGTACATACAGTCTTAA
FMO03384.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Uba1-RC | 4343 | CG1782-RC | 289..1457 | 38..1205 | 5235 | 97.5 | Plus |
| Uba1-RA | 4343 | CG1782-RA | 289..1457 | 38..1205 | 5235 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9692282..9693040 | 797..38 | 3750 | 99.9 | Minus |
| 2R | 25286936 | 2R | 9691353..9691704 | 1148..797 | 1080 | 93.3 | Minus |
Blast to na_te.dros performed 2014-11-28 19:38:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2633..3036 | 176..589 | 214 | 57.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6843 | 499..587 | 212 | 74.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2332..2470 | 452..587 | 202 | 65.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6874 | 452..600 | 199 | 63.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6822 | 499..587 | 194 | 73.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2410 | 499..587 | 185 | 70.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6807 | 502..587 | 185 | 70.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6915 | 402..587 | 182 | 61.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1023..1149 | 464..587 | 179 | 63.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6765..6897 | 452..587 | 167 | 62 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6922 | 341..543 | 164 | 59.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2539 | 348..587 | 163 | 57 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1099..1166 | 491..558 | 159 | 73.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2356..2495 | 452..588 | 151 | 62.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1582 | 508..573 | 147 | 71.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1539..1606 | 505..570 | 137 | 69.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2596..2647 | 503..554 | 134 | 73.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1504..1605 | 453..551 | 124 | 62.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1474..1573 | 485..587 | 119 | 63.8 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 531..648 | 499..613 | 115 | 56.8 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7951..8026 | 492..567 | 110 | 60.5 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9395..9470 | 492..567 | 110 | 60.5 | Plus |
FMO03384.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:03:01 Download gff for
FMO03384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Uba1-RA | 285..1431 | 31..1180 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:55 Download gff for
FMO03384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Uba1-RA | 285..1431 | 31..1180 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:05 Download gff for
FMO03384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Uba1-RA | 285..1431 | 31..1180 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:05 Download gff for
FMO03384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9691320..9691703 | 798..1180 | 93 | <- | Minus |
| 2R | 9692282..9693044 | 31..797 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:55 Download gff for
FMO03384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5578825..5579208 | 798..1180 | 93 | <- | Minus |
| arm_2R | 5579787..5580549 | 31..797 | 99 | | Minus |
