FMO03385.5prime Sequence
1095 bp (854 high quality bases) assembled on 2008-07-09
> FMO03385.5prime
TATATAATACAAAGTTATCAGTCGACATGGCGCCGAAATCCAGAAAGAAG
AAGGCTCATGCCCGCTCCCTAACCTGCTACTGCGATGGCAGTTGTCCGGA
CAATGTAAGCAATGGAACCTGCGAGACCAGACCCGGTGGCAGTTGCTTCA
GCGCAGTCCAACAGCTTTACGATGAGACGACCGGGATGTACGAGGAGGAG
CGTACATATGGATGCATGCCTCCCGAAGACAACGGTGGTTTTCTCATGTG
CAAGGTAGCCGCTGTACCCCACCTGCATGGCAAGAACATTGTCTGCTGCG
ACAAGGAGGACTTCTGCAACCGTGACCTGTACCCCACCTACACACCCAAG
CTGACCACACCAGCGCCGGATTTGCCCGTGAGCAGCGAGTCCCTACACAC
GCTGGCCGCCTTTGGCTCCATCATCATCTCCCTGTCCGTGTTTATGCTGA
TCGTGGCTAGCTTATGTTTCACCTACAAGCGACGCGAGAAGCTGCGCAAG
CAGCCACGTCTCATCAACTCAATGTGCAACTCACAGCTGTCGCCTTTGTC
ACAACTGGTGGAACAGAGTTCGGGCTCCGGATCGGGATTACCATTGCTGG
TGCAAAGAACCATTGCCAAGCAGATTCAGATGGTGCGACTGGTGGGCAAA
GGACGATATGGCGAGGTCTGGCTGGCCAAATGGCGCGATGAGCGGGTGGC
CGTCAAGACCTTCTTTACGACCGAAGAGGCTTCTTGGTTCCGCGAGACTG
AAATCTATCAGACAGTGCTGATGCGACACGACAATATCTTGGGCCTTCAT
TGCCGCCGATACAAGGGTAATGGTAGCTGGACACAGATGTTGCTGATCAC
CGACTTCCCACGAGTGGGCAGCCAACCCATTACCTCTTCAATGTCGGTGA
TCAACCGAGAAGCTGCATTGGCTGGCGTTTTCGCTTGGCCTCCGGATTGG
GCCCACCTGCACAACAGATTTCGGAACCCCTGGCAAACCAGCTATCGCTC
ATTCGGATATTAGAGCAAAAACATTTTTGGTTCAAGCGAAATGGGGAAGT
GGCGCATTATGCCTGACTTCCGGGCTGGGAAGTGAAGATAAAATT
FMO03385.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tkv-RD | 3616 | CG14026-RD | 991..2049 | 24..1087 | 4590 | 96.6 | Plus |
| tkv-RA | 2846 | CG14026-RA | 255..1279 | 58..1087 | 4420 | 96.4 | Plus |
| tkv-RB | 3129 | CG14026-RB | 538..1562 | 58..1087 | 4420 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5220619..5221401 | 1027..248 | 3120 | 96.1 | Minus |
| 2L | 23513712 | 2L | 5221463..5221651 | 248..60 | 945 | 100 | Minus |
| 2L | 23513712 | 2L | 5236336..5236372 | 60..24 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:26:59 has no hits.
FMO03385.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:27:24 Download gff for
FMO03385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tkv-RD | 979..1993 | 13..1027 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:41 Download gff for
FMO03385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tkv-RD | 983..1997 | 13..1027 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:36 Download gff for
FMO03385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tkv-RD | 983..1997 | 13..1027 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:36 Download gff for
FMO03385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5220632..5221400 | 249..1015 | 96 | <- | Minus |
| 2L | 5221463..5221650 | 61..248 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:41 Download gff for
FMO03385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5220632..5221400 | 249..1015 | 96 | <- | Minus |
| arm_2L | 5221463..5221650 | 61..248 | 100 | <- | Minus |
