FMO03386.5prime Sequence
948 bp (931 high quality bases) assembled on 2008-07-09
> FMO03386.5prime
ACTTCGTATAGCATAATAAAAAGAAGTTATCAGTCGACATGATGCGACCT
CGCTGTCTGGTGTCCTTTTTGGGCATCTGCCTGGTAATCAGCCTGGGAAT
GCGTTGCGATGCTCGAGCGGTGAACGTGAGCAACACCTGGACGATGCCGC
AAGAGGGTCTGAACGTCTTTTATCGCTTCTTCCGCGATCGCATATCCTGG
TTTGAGGCCGATGCCGTCTGTCAATTTCATCACGCCAATCTAGTGACGGT
CGACAACAGTTTTCAATTCGATGCAACGCGCGACCTGCTGAGGGAATTGG
ATGTGAACGACATCGTTTGGATTGGTCTCATGCGACCGCAGAACTCGGAT
CGTTTTATGTGGTCGAACTCGCGTCCCTTGGTGGCAGATACTGGTTACTG
GGCCGAATCCCTACCACTGATGGATGCTCCGCTCTGCGCCGTAATCGATC
CCATTCTAGATTACCGCTGGCACGCTCTGCGCTGCGGTGGACCCGAAACG
GCCTCCTTCCTTTGCGAAATGCCAGTTCCCAGCTGGGCGGATGCTTGCAT
ACTGAAGGACATGCCCAATTTGACCATGCAATACATGGCGGATACGGCCA
GCATCGAGCTGATCCGCAATTGCCAGGAGGAGGGACTGCTGCGACACACC
TGCAAGGGCAAGGAGGATCGTGAGCGTGCCATTCGACAGCTGATCTGTCC
CCAAGGAGCGTTTGGAGGCGCAGCGCATCAACGACATCACAAACTCGCAC
TTCAAGTCGCTGCAGATCATCACCACATCCACACTGATAACAAGGAGAAT
AACGACATCGATCTGCTGCCCAACTATGGCCGCCGATCCGGAATGGGCCA
TCAAATCGAAGTGGCGCCACCAGTGCCGCCCGTTTCGGTTCCCGGATTGG
GAGAGCTGATGCAAGCGGATGCTTCGGGCGCCGTATCACTTGTCCGGG
FMO03386.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:00:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15765-RB | 4315 | CG15765-RB | 71..978 | 39..947 | 4355 | 98.9 | Plus |
| CG15765-RA | 3138 | CG15765-RA | 144..1051 | 39..947 | 4355 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:00:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5837204..5837480 | 664..940 | 1140 | 95.7 | Plus |
| X | 23542271 | X | 5836730..5836890 | 365..525 | 790 | 99.4 | Plus |
| X | 23542271 | X | 5836973..5837115 | 524..666 | 715 | 100 | Plus |
| X | 23542271 | X | 5834350..5834480 | 119..249 | 655 | 100 | Plus |
| X | 23542271 | X | 5836040..5836156 | 249..365 | 585 | 100 | Plus |
| X | 23542271 | X | 5819122..5819204 | 39..121 | 415 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:00:05 has no hits.
FMO03386.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:27:44 Download gff for
FMO03386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15765-RA | 139..1046 | 39..948 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:16 Download gff for
FMO03386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15765-RA | 144..1051 | 39..948 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:46:46 Download gff for
FMO03386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15765-RA | 144..1051 | 39..948 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:46:46 Download gff for
FMO03386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5834351..5834480 | 120..249 | 100 | -> | Plus |
| X | 5836041..5836155 | 250..364 | 100 | -> | Plus |
| X | 5836730..5836890 | 365..525 | 99 | -> | Plus |
| X | 5836975..5837114 | 526..665 | 100 | -> | Plus |
| X | 5837206..5837486 | 666..948 | 96 | | Plus |
| X | 5819124..5819202 | 41..119 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:16 Download gff for
FMO03386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5731239..5731519 | 666..948 | 96 | | Plus |
| arm_X | 5713157..5713235 | 41..119 | 100 | -> | Plus |
| arm_X | 5728384..5728513 | 120..249 | 100 | -> | Plus |
| arm_X | 5730074..5730188 | 250..364 | 100 | -> | Plus |
| arm_X | 5730763..5730923 | 365..525 | 99 | -> | Plus |
| arm_X | 5731008..5731147 | 526..665 | 100 | -> | Plus |
