FMO03387.5prime Sequence
1244 bp (935 high quality bases) assembled on 2008-07-09
> FMO03387.5prime
TCGTATAGCATAATAATACAAAGTTATCAGTCGACATGGTATCCGGTCGT
CCTCTACTCTACCTCTCACTGCCCGGTGTAGCATTTATACTCGGCGTCTT
TTGGTTTCGGCGTAGATATAAAAATTGTTTAGACAAGCCCGACGACGAGG
ACTCATCGGCCATCAATGACTCGTCGATTGAACCAACTGTGCAGGCGCGC
AAGGCCAACGGAGTCCTGCAGAATGGCAAGCTGCCACAGCAGTCGGCCAG
CAAGTCGATGAACATCAACGGAACTTTAGTTAACGGTAGCGGAAGCGGTA
GCGGAAGTAGCAGTGATGAGAAGGACAGCCCCACTACCATGTTGTATGGT
AAATCAGCACCAATCAAAATCCAGAGCAATGGACGCACTTCAAATGGCAA
GCATCAGCAGCAGATCGATTCCGAAATACTGAAGTCAAAGATACAGGATG
CCGAACACAAGACACTCTGCTCCATAGACGAGGATTTCGAGAATCTATCG
TCGCCACGTGATTTACCCGATTCGGTAAATACACGCGTATCCTTCTACAA
TCGTAAGGCTACCCAAAAGACGGTGGAACCGGTGGTGATTAAGGCCACGC
GCACACCCAAAATATCGCCAGAGAACTCCTTCCTGGATACCAACTACACC
AACAAGGAGTGCGAGCAGAACAACAACTGTGAGCCCAAGGAGGAGCCCTC
CAAGAAGGAGGCCGATCAGGAGGAGCTCGAGCAGGATCAGGAGCAGACGG
TGCTGAAGGAGGAAGTGGTTGGATAGCAATGGTAATCAGAAGCGCAATGT
GGATGCGGCCAGTCCATCGCTGAGCATTTGCAGTGTGCAATCGGGCGATT
CTGGCAGGGATTCAGCTTGCCGCGCTCGGAGCCGACACGCGTGAAAACCA
CCTACGAGTTCCTCTTCCCGATCAGCTTGAATGGTCACCCTGTACCGCCG
CAAGGCGGGCGTTTATTTACCCAAATTCAAGGCAAGACCCCTGGCCAGCG
TGTCCTGTAGGCCAAGAATCCCTACTTCGGCAAGGTGCGCAATCTGTACC
ATTGAGGGAAACGGAGAGCAGGATGGATGCCGCCTGGACATGATCCGTCA
ACGTTTGCCGACAGGCTATCTGAACTTCCACCATGCACGCATCCACTTTG
CCTTCCCAGAACATATTCCCCTACGAACGAAGCCCTTACAACTCTACAAC
TGGAACTGTAATGAGAGAGCGACATCTCATAACCCAAGATAATA
FMO03387.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spoon-RA | 3341 | CG3249-RA | 438..1610 | 36..1208 | 5035 | 96.3 | Plus |
| spoon-RE | 3179 | CG3249-RE | 276..1448 | 36..1208 | 5035 | 96.3 | Plus |
| spoon-RD | 3668 | CG3249-RD | 765..1937 | 36..1208 | 5035 | 96.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5416286..5417353 | 1110..36 | 4630 | 97.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:27:24 has no hits.
FMO03387.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:03:05 Download gff for
FMO03387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3249-RC | 156..1300 | 27..1172 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:42:04 Download gff for
FMO03387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spoon-RD | 230..1374 | 27..1172 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:55 Download gff for
FMO03387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spoon-RD | 756..1900 | 27..1172 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:55 Download gff for
FMO03387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5416218..5417362 | 27..1172 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:42:04 Download gff for
FMO03387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5310251..5311395 | 27..1172 | 96 | | Minus |
