FMO03388.5prime Sequence
1073 bp (851 high quality bases) assembled on 2008-07-09
> FMO03388.5prime
CGTATAGCATAATAAGGCGAAGCTATCAGTCGACATGCGCACGAAACACC
TGCTCCTGATACTGATCGGAGTGATAATCGCCACGATCGTCTTCATCGCA
TTTGGTCCAGCCGGAGAGCCGAACGATTCATTCAAGAACATCGTTGTCCA
GACGCACCAGCAGTTTAAAGAGTTCCAGGAAAACCTCCGCGTTGGCTTGG
AACGCAAAAAGCTCGAAATAGACCCAAAGTATTTGCTTCTTCTGGGCTTC
ACCTCGTCAAATGAAGCTACAGGCCAACAGCAGCAGCTGGATCAGCAAAA
TGTGGTGGACATCGGTTCACCAGGTCAGCAACTGCCAAAGACAGATTTTT
CAGCGCCGGCTACAAAAGCGGAACTGGAGCTCAGCGAACTGCGAGGTCTG
CGGCGTCCACAGGATGCTGTTACCTTCGGTAGTCAGGCAGGAGATCAAAA
GGGGCAGCGGAAGCGGATCACGACGCCGTACAACGGTACAAAGAGCAACT
TCACAATCGTCAGCTATGTGCTGGAGGGGCAGGCCGCATCGGCCATCCTG
CTGGCCCAAATATTGCCGCCAAGCTTCCCAGCGAGTACCTGCTAATCTAC
GATTTGGGCGTTTCCGAGGAGCAACTACGGGATTTGGGCGCCTACTGTAA
TAACAGCCGATGCTCGGTGATCACCCTATGATCTGTCGGAGTTCCCTCCT
TTCGTCGCCGATCAGCGGACGCACGCCTACCGGGCCCATTGTAATTAAAG
ACGGTCTTATGCGTGCCCGATCGGTTCTCTTCTTGGAAACAGCATGCGCG
TGCGCGGAGGTTCCGCCCAGCTGCAAGTCTGCAGAGCATCCGTATGAATC
AGGAGTGGGAAAATCTGCAGTCAAGTCCGCTGGAGTGCTCAGGATGAACA
CAGCGACGGCGTATCCTCTCTGACGCATCCAAAAATGTCGACTACTCGAG
TCGAAGCTGAGGAGTTAACTTCCTCGGTTGGTCGACTGATGCTGTCTTCC
TCTCGAACGGTCCTTGGGGCGAGAAAAGATCATGCTCCTGGCTGAATGGC
TGCCTCACCCTCTCAGAAGTGAT
FMO03388.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:51:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14764-RC | 2272 | CG14764-RC | 366..1407 | 34..1062 | 4460 | 96.5 | Plus |
| CG14764-RA | 2742 | CG14764-RA | 836..1877 | 34..1062 | 4460 | 96.5 | Plus |
| CG14764-RB | 1293 | CG14764-RB | 836..980 | 34..178 | 710 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:51:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7947624..7948523 | 1062..176 | 3360 | 95.1 | Minus |
| 2R | 25286936 | 2R | 7953901..7954046 | 179..34 | 715 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:51:17 has no hits.
FMO03388.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:07:47 Download gff for
FMO03388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14764-RA | 820..1872 | 28..1071 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:40 Download gff for
FMO03388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14764-RA | 830..1882 | 28..1071 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:27:55 Download gff for
FMO03388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14764-RA | 830..1882 | 28..1071 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:27:55 Download gff for
FMO03388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7947619..7948520 | 179..1071 | 95 | <- | Minus |
| 2R | 7953902..7954052 | 28..178 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:40 Download gff for
FMO03388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3835124..3836025 | 179..1071 | 95 | <- | Minus |
| arm_2R | 3841407..3841557 | 28..178 | 97 | | Minus |
