FMO03394.5prime Sequence
758 bp (758 high quality bases) assembled on 2008-07-09
> FMO03394.5prime
CGTATAGCATACATAATACGAAGTTATCAGTCGACATGAGCAGATTGGGC
TTTGAGCAATTCCCGGACTACCAGGTGCCCGGCATGAAGCATCCTGATTT
CTCGCCCTACGAGTCCAATGGCGGCTCCATTGTGGCCATCGCCGGAGATG
ACTTTGCCGTAATTGCAGCGGACACCCGCCTGAGCAGCGGCTACAACATT
CACTCGCGAACGCAGAGTAAACTCTTTAAACTCTCGCCCCAGACAGTGTT
GGGTTCCGCAGGCTGCTGGGCGGACACGCTCTCGTTGACCGGATCGATTA
AGGTGCGCATGCAGAGCTACGAGCATACCCATCTGCGCACCATGACCACT
GAGGCCGTGGCCCAGATGCTCTCCATCGCCATGTACAATCGCCGCTTCTT
CCCGTACTACGTGTCGAACATTCTGGCTGGAATTGACAACGAGGGCAAGG
GCGTCGTCTACTCCTACGATCCCATCGGTCACTGCGAGAAGGCTACATAC
CGCGCCGGCGGCACTGCCGGCACCCTGCTGCAACCGGTGCTGGACAACCA
GATTGGTCACAAGAACATGAATTTGGAAGACGCCGACAAGATCAAGTTAA
CCAAGGAGCGGGCCGTGAGCGTTGCCTCCGACACCTTCATCTCTGCCGCT
GAGCGCGACATCTACACCGGCGACTCTGTGCTGATCAACATCATAACCAA
AGATGGAATTGAAGTACGAACTCTGACGCTGCGTCAGGACGCAAGCTTTC
TAGACCAT
FMO03394.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosbeta6-RA | 944 | CG4097-RA | 99..805 | 34..740 | 3535 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16609539..16610155 | 740..124 | 3085 | 100 | Minus |
| 3L | 28110227 | 3L | 16610230..16610320 | 124..34 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:47:54 has no hits.
FMO03394.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:05:59 Download gff for
FMO03394.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pros26-RA | 96..812 | 28..746 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:41 Download gff for
FMO03394.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosbeta6-RA | 93..809 | 28..746 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:26:20 Download gff for
FMO03394.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosbeta6-RA | 93..809 | 28..746 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:26:20 Download gff for
FMO03394.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16609535..16610154 | 125..746 | 99 | <- | Minus |
| 3L | 16610230..16610324 | 28..124 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:41 Download gff for
FMO03394.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16602635..16603254 | 125..746 | 99 | <- | Minus |
| arm_3L | 16603330..16603424 | 28..124 | 95 | | Minus |
