FMO03396.5prime Sequence
697 bp (177 high quality bases) assembled on 2008-07-09
> FMO03396.5prime
ACTTCGTATAGCATAAAAAAAAGAAGTTATCAGTCGAATGCCCCTCAATA
TAAGACCTTTGCTGGTCTGCGATGCTGTGGACAAATCCTGCGTGGAGCTG
CTGGAACAGCATGGGATTAAGGTTACCTACTAACTAAAGCTCCCCGTGGA
GGAACTGTGTCAGGAAGTTAAGAATTTCGACGCAGCCATCGTTCGTTCGG
ATACCAAAATAACCGCGGAAGTTTTGGCCGCCGGATCCGGCAGCCTGAAG
GTCGTTGGCCGTGCGGGGGCGGGTGTTGACAACATCGATGTTCCCTCAGC
CACAGCGCAAAATGTCGTTGTTCTGAACACTCCGGCTGGCAATTCCATTT
CGGCCTGTGAGCTGACGTGCATTCTAATTGGCTCCCTGGTCCGTCCCGTC
GTCCCCGCCGGTTAAAGCATGAAGGAAGGTCGCTGGGACAGGAAGCTCTA
TGCCGGTACAGATCTGTATGGAAAAACCCTGGCCGTTCTCGTATTGGGAC
GCATTGGACGCGAGGTCGCCATTCTGATGAATACCTGGGGCATGCCGATT
ATTGGTTACAATCCCATCACCACGGAGGCTGAGGCCAAGGCGGCGGGCAT
CGAGAAGATGACCCTGGATAGATTTGGCCACTGGCGGACTACATAACCGT
GCACGCCCCGCTGATCCCACTGCTAGAAATCTCATATCTGCGGAGAC
FMO03396.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:33:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6287-RA | 1284 | CG6287-RA | 121..782 | 38..697 | 2840 | 95.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:33:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11152337..11152554 | 545..328 | 925 | 95 | Minus |
| 2L | 23513712 | 2L | 11153410..11153566 | 327..171 | 755 | 98.7 | Minus |
| 2L | 23513712 | 2L | 11152149..11152276 | 669..543 | 500 | 94.5 | Minus |
| 2L | 23513712 | 2L | 11155516..11155601 | 123..38 | 370 | 95.3 | Minus |
| 2L | 23513712 | 2L | 11155083..11155136 | 172..119 | 255 | 98.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:33:41 has no hits.
FMO03396.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-09 15:06:02 Download gff for
FMO03396.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6287-RA | 116..777 | 38..697 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:43 Download gff for
FMO03396.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6287-RA | 121..782 | 38..697 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:14 Download gff for
FMO03396.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6287-RA | 121..782 | 38..697 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:14 Download gff for
FMO03396.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11152008..11152026 | 679..697 | 94 | <- | Minus |
| 2L | 11152139..11152271 | 548..678 | 92 | <- | Minus |
| 2L | 11152335..11152554 | 328..547 | 94 | <- | Minus |
| 2L | 11153410..11153564 | 173..327 | 98 | <- | Minus |
| 2L | 11155083..11155133 | 122..172 | 98 | <- | Minus |
| 2L | 11155518..11155601 | 38..121 | 95 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:43 Download gff for
FMO03396.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11152008..11152026 | 679..697 | 94 | <- | Minus |
| arm_2L | 11152335..11152554 | 328..547 | 94 | <- | Minus |
| arm_2L | 11152139..11152271 | 548..678 | 92 | <- | Minus |
| arm_2L | 11153410..11153564 | 173..327 | 98 | <- | Minus |
| arm_2L | 11155083..11155133 | 122..172 | 98 | <- | Minus |
| arm_2L | 11155518..11155601 | 38..121 | 95 | <- | Minus |
