FMO03401.5prime Sequence
783 bp (770 high quality bases) assembled on 2008-07-21
> FMO03401.5prime
CTTCGTATAGCATACATAAAACGAAGTTATCAGTCGACATGAGCATTCGG
TCTACCCATTGCATACCCACTCGTGTGTATCTGCACCTTCTGCTGGTGTC
GCTACCACTTTTGGCAGTTCACGCCACGCCCGCCATAAGTCCGCAATCGT
TGCGCGGCATCATCTTCCCCGTCGAAACCTTCGATGAGTGCCAACTGGAG
GACGTGGCGCGGACGAAGGGCACCTGCCGGCGCATGGAGGACTGTCCCAG
TGCCCTGAACGGCTGGCTAGAGCGGCGCGAATCGCCCAAGACCTGCTACT
TTGTGAGGTTCGACCACTATGTGTGCTGCGCCCCAGCTGTAGCTCCAATT
GTCACCCGATCCAGCCAGCAGGCCTGCAATGAACTGAACAAGGTGTCAAA
GGTCAAAGAGATCGACGAGTTCTTCGTGTCGGTGGTGGGCGGCATGCCCA
CCCGTCCGCGGGAGTTCCCCTTCATGGCCGCATTGGGCTGGCGTTCGAAC
TTCGATCAGAGGATATACTATCGATGCGGCGGCGCCCTTATCGCCAACAA
CTTTGTCCTGACCGCAGCCCACTGTGCCGATTTGGGCGGTGAGCCACCCA
GTCAGGTGCGCCTCGGTGGCGACAATCTAACCCTGACCGAGGGCGAGGAT
ATAAGCATTCGGCGCGTGATCATCCATCCCGGATTACAGTGCCAGCACGG
CATAAACGATATTGCGCTGCTTGAACTGGAAACGGCGGCCAAGCCGGAAC
TGAAACCCACTTGCATTTGGACGCAAAGGAGGT
FMO03401.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spirit-RD | 1595 | CG2056-RD | 175..920 | 39..783 | 3615 | 99.2 | Plus |
| spirit-RC | 1546 | CG2056-RC | 126..871 | 39..783 | 3615 | 99.2 | Plus |
| spirit-RA | 1575 | CG2056-RA | 155..900 | 39..783 | 3615 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8572459..8572715 | 372..116 | 1285 | 100 | Minus |
| X | 23542271 | X | 8572091..8572308 | 589..372 | 1090 | 100 | Minus |
| X | 23542271 | X | 8571783..8571969 | 775..589 | 795 | 97.3 | Minus |
| X | 23542271 | X | 8572828..8572906 | 117..39 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:22:08 has no hits.
FMO03401.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:29:30 Download gff for
FMO03401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spirit-RA | 152..900 | 32..783 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:17:09 Download gff for
FMO03401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spirit-RA | 152..900 | 32..783 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:31 Download gff for
FMO03401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spirit-RA | 152..900 | 32..783 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:31 Download gff for
FMO03401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8572091..8572307 | 373..589 | 100 | <- | Minus |
| X | 8572459..8572713 | 118..372 | 100 | <- | Minus |
| X | 8572828..8572907 | 39..117 | 98 | <- | Minus |
| X | 8571774..8571968 | 590..783 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:29:30 Download gff for
FMO03401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8465807..8466001 | 590..783 | 96 | <- | Minus |
| arm_X | 8466124..8466340 | 373..589 | 100 | <- | Minus |
| arm_X | 8466492..8466746 | 118..372 | 100 | <- | Minus |
| arm_X | 8466861..8466940 | 39..117 | 98 | <- | Minus |
