FMO03405.5prime Sequence
1236 bp (1070 high quality bases) assembled on 2008-07-21
> FMO03405.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGCGGGAGCGATGC
GCCGCATGGGATAAGGATCCGGTATTCGGTAATCTAATGAAAACAAATCC
CGAGGCTCTGAAGCGCGTGGTACCTTGTGGTGGCGATTGCCAGGAGCCGG
ATCTTGGCCTGAGCAACAGCGATCGTCAGGTTTTGATAGATGAGGTGCAG
ATTGTTATCCACACGGCGGCCACTGTGCGTTTTGTGGAGCCGCTGCACAT
CGCCCTGGCTGTTAACACCCGAGCCACCCGACTCATGATTCAACTGGCCA
AGGAGATGTCCCACTTGGAGTCCTTTGTCCATGTGTCCACCGCGTACTCA
AACTGCGTGGTGGAGCACGTAAGTGAACGCTTCTATCCGGAGCACTTGAC
CTGCCCTGCCGAAAAGATCCTAGAGCTGCTGGAAAGCATAAGTCCTGAGC
TATTGGATAAAATGGCACCGGCGCTGATGGGCAAGTATCCCAATACGTAT
ACGTATACCAAGGCTCTGACGGAGCAGGTGATCCAGAAGGAGGCGAAAGA
TTTGCCGCTTAGCATTTTTCGTCCGGGTGTCATAATTGCCAGCTATAAGG
AGCCCATGCCCGGCTGGATCGACAACCTGTACGGACCCATTGCAGTTCTC
TACGGAGCAGCCTTCGGAATACTGCATATCACACTGCTTAATCTTAAGGC
CCAGGCTGGAATTGTACCCGTGGATTACTGCGTCAATATGGTGCTGACCT
GCGCTTGGAACACGGCCCGGGATACAAGTATCAAGCTATCGCCGGAGCCA
CCTATCTACAATTTTACGCCAAATAATGATAACCTGATAACCTGGGGTGG
ATTTCGGGACAAGGCGGCGAGGCTGCGGTACACGTATCCACTGACCAAGA
TGATGTGGTTGCCGTTTCTGCATTGCACCACCATTCCCTGGCTATTCCGG
TTCACGGCCATCTTTTTATCACCTGCTCCCGGGCTATGCCATTGATCTGG
CCTTGCGTTTATGGGGCAAAAAGCCCACGTTTGATCAAGTTGTACGACAG
AATCCAACAAGAACAATTGATATCTGCCACCCTTTGGTGATCACATCCTG
TCGTCGATACCGTCACCACCCCGCAGGTTGTGACCAAATGTGTCAGGATC
AAAGCCTTACGAATTTTATAGACCGCTGCAACTGCGTATATCACTCCTCA
GCCCTGCCCAGTGAGTCGCATCTTATACTTCGGCCC
FMO03405.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:12:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10097-RC | 4716 | CG10097-RC | 3138..4275 | 36..1170 | 5190 | 97.7 | Plus |
| CG10097-RD | 5233 | CG10097-RD | 3138..4275 | 36..1170 | 5190 | 97.7 | Plus |
| CG10096-RD | 2358 | CG10096-RD | 263..1400 | 36..1170 | 5190 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:12:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12391848..12392359 | 582..71 | 2560 | 100 | Minus |
| 3R | 32079331 | 3R | 12391279..12391792 | 1100..583 | 2225 | 97.1 | Minus |
| 3R | 32079331 | 3R | 16618397..16618628 | 192..423 | 305 | 75.4 | Plus |
| 3R | 32079331 | 3R | 16615774..16615940 | 192..358 | 250 | 76.6 | Plus |
| 2L | 23513712 | 2L | 8520272..8520553 | 262..543 | 240 | 72.3 | Plus |
| 3R | 32079331 | 3R | 12392456..12392494 | 74..36 | 195 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:12:11 has no hits.
FMO03405.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:41 Download gff for
FMO03405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10096-RA | 3352..4458 | 28..1138 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:17:10 Download gff for
FMO03405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10096-RB | 257..1363 | 28..1138 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:07:51 Download gff for
FMO03405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10096-RD | 257..1363 | 28..1138 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:07:51 Download gff for
FMO03405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12392459..12392500 | 28..71 | 93 | | Minus |
| 3R | 12391848..12392358 | 72..582 | 100 | <- | Minus |
| 3R | 12391239..12391792 | 583..1138 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:41 Download gff for
FMO03405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8216961..8217514 | 583..1138 | 96 | <- | Minus |
| arm_3R | 8217570..8218080 | 72..582 | 100 | <- | Minus |
| arm_3R | 8218181..8218222 | 28..71 | 93 | | Minus |
