FMO03406.5prime Sequence
1215 bp (1052 high quality bases) assembled on 2008-07-21
> FMO03406.5prime
CGTATAGCATACATTAAACAAAGTTATCAGTCGACATGTCGCAGTTCAAT
TTTGTGAGCGATTTGCAGAATGCTCTCATCATGGACGGCGAGACGCGCGG
ACCTGCGCCCAGGTGGAAGAAGAAGCTGGAGGCGTCTCTAAATGGAAGTG
TGAATACCACTCGGTCGGTGCTATCCGTCTCGTACAACACCAGTTTCTCG
GGTGTCCAGGCGCCCACGAAAACTCCGGGCAAGAGCAGCGAGGGCAAGAC
CAAGAAGTCCAACACCACGCCCTCTAAGACGCCAGGAGGCGGAGATCGCT
TTATTCCGAATCGGGCGGCTACCAACTTTGAGTTAGCACACTTTCTGGTG
AACAAAGACTCCGGCGATAAGTCCGATGAGGAGAACGACAAGGCCACCTC
GAGCAACAGCAACGAGAGCAATGTCCAGGCTTCGGCTCACAAGGGCGACC
GGCAGAAACTCATCTCTGAAGTGGCCCAGGTCGGTGACTCCAAGGGCGGG
CGCATTTTGTGCTACCAAAACAAGGCTCCCGCTGCTCCAGAAACACACAA
CAATCCCCTGAAGGTCGTGTACTCCATTAAGACACCCATATCCACAAAGA
GTGGCTCACGCTATATACCCACCACATCCGAGAGGATTCTGGATGCACCT
GATTTTATTAACGATTACTATTTAAATCTTATGGATTGGAGTGCCGACAA
TATAGTGGCTGTGGCCTTGGGCAGTTGCGTCTATTTGTGGAACGCACAGA
CCGGAAATATCGAGCAGCTTACGGAGTTTGAGGAGGGCGACTACGCACGC
TCGCTATCGTGGATCCAGGAGGGGCAGATACTTGCCATCGGCAACAGCAC
CGGTGCCGTGGAGCTGTGGGACTGCTCCAAAGTGAAGCGTCTGCGAGTGA
TGGATGGACACAGTGCCCGAGTGGGATCCTTGGCCCTGGAACTCATTTCC
TGGGTTTCCTCTGGCAGCCGGGATGGCACCATTGTCCACCACGATGTGCG
TGCACGTGAGCCCAGCTTTCCCATTGTCCCGGACACCACGCAGGAGTTTG
CGGCCTAAAGTGTCCACGGATTTCAGTATTTGCCTAGCGGAGCAACGACA
TCTGTGATGTTTGTTCGCGGCAGCGTGCCTGGACCTGCACCCGATCCTTG
CCAATCACGACCATCAGCTGCAATGCCGCATGGGCTGGTGGTCCCTGTGG
CAAACCAAGTATATA
FMO03406.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fzy-RA | 1996 | CG4274-RA | 146..1301 | 36..1176 | 5055 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16311505..16311827 | 347..669 | 1615 | 100 | Plus |
| 2L | 23513712 | 2L | 16311881..16312303 | 670..1092 | 1605 | 95.6 | Plus |
| 2L | 23513712 | 2L | 16311101..16311414 | 36..349 | 1570 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:30:37 has no hits.
FMO03406.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:10 Download gff for
FMO03406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fzy-RA | 142..1241 | 28..1125 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:15:31 Download gff for
FMO03406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fzy-RA | 169..1268 | 28..1125 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:19:42 Download gff for
FMO03406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fzy-RA | 142..1241 | 28..1125 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:19:42 Download gff for
FMO03406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16311090..16311412 | 20..347 | 97 | -> | Plus |
| 2L | 16311506..16311827 | 348..669 | 100 | -> | Plus |
| 2L | 16311881..16312342 | 670..1125 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:10 Download gff for
FMO03406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16311090..16311412 | 20..347 | 97 | -> | Plus |
| arm_2L | 16311506..16311827 | 348..669 | 100 | -> | Plus |
| arm_2L | 16311881..16312342 | 670..1125 | 95 | | Plus |
