FMO03407.5prime Sequence
1115 bp (1035 high quality bases) assembled on 2008-07-21
> FMO03407.5prime
ACTTCGTATAGCATACATTAAACGAAGTTATCAGTCGACATGAGGCTGTT
TGCGGCAGCAACAGTTGCGCTTGTATTGCTTCTGGGCCAAGCAGCTGGCG
AGGAGCTTGCGGAGGAGCGAGCGGGACAGGCACAGGGCGATGCGGAGAGC
ACGGAATCTTCAGAAACAACAACGGACCAGGCGGTGAGTGAGCCCCCGAT
CACGCTGGTCCACGTTCTGAATCCCGGCGAGCGGGAGTATTTGTCACCCA
ACCTGATTGGTGTCCAGAACATTGCGATGACCTTCCTGCCACTGTCGATG
AACTTTGTGAATATCATCGACGCCTTTCGGGAAATCACCGCCGGAGTGCG
CTATGAGATCCTGCTAAACGCGCTAGACACAAAGGCAATACAGCCGGCGG
AAGCGGACATAGTCTGCCGCCTGGTCATCCTGGAAAAGCCTTGGCTGCGC
ACCCAGTGGGGCGACAAGCACCGCGAACTGGTTACCTCCAATTGCACCGA
CCCAGCGGTGAACTCGGTGGCCGGAGATCCGGCAGAGAAGGCGCGACTGC
TTAACGAGAAATATGTGAGTAATAGCATCTTTAATGGCGGTCAGAGGAAA
GAACTGAGCGACGCAGAGATGGCCAATCTGGAGTCACAGATACTCACTAA
CCTGGGACCTATGAGGCGGAAGGTCAGTCTGACCAAAACCGCTTCAGCGG
CTCCTGTTCGTGCACCTTCTCCTGCTGCTCCTTCTCCTGCCGAGGCTGCC
CCTCTGGATTCGGCAGCTCCTGCTGTATTAACCGCATCTATAGCAGTCAC
CAAGCTTAGTCCACCTGACGCCACTAATGAGACGGCCACGGCAATTAGCA
TTGATAATGTGGAAGAAAAGGCAGAAGAGGTGGAGGACAAGCACGAAGAG
GAGGTCGTAGCCACCACCACAATCGCCACGGAGCTGAACGAAAATGAGAA
GCGTTGGCTCGACGATTTCCTATCGGTGGGTGCGTATGACTTCGAGAAGA
GTCAGGAGATGGGCAGCACAGAGGAGCCGGCCGGGAGCAAAGATCCCGAG
TTGAGGCTACTACCATACCGACAGCATTATCAGCAGCCTTTCTAGACCCT
TCGTTGGCGCGCGGT
FMO03407.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12163-RC | 1425 | CG12163-RC | 213..1264 | 38..1082 | 5055 | 99.1 | Plus |
| CG12163-RA | 2299 | CG12163-RA | 213..741 | 38..566 | 2645 | 100 | Plus |
| CG12163-RB | 1882 | CG12163-RB | 213..322 | 38..147 | 550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5243313..5244256 | 1082..146 | 4365 | 98.7 | Minus |
| 3R | 32079331 | 3R | 5251424..5251533 | 147..38 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:29:56 has no hits.
FMO03407.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:38 Download gff for
FMO03407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12163-RC | 213..1264 | 38..1082 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:15:33 Download gff for
FMO03407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12163-RA | 214..742 | 38..566 | 100 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:32 Download gff for
FMO03407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12163-RC | 213..1264 | 38..1082 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:32 Download gff for
FMO03407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5243313..5244254 | 148..1082 | 99 | <- | Minus |
| 3R | 5251424..5251539 | 30..147 | 95 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:38 Download gff for
FMO03407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1077146..1077261 | 30..147 | 95 | -> | Minus |
| arm_3R | 1069035..1069976 | 148..1082 | 99 | <- | Minus |
