FMO03418.5prime Sequence
259 bp (259 high quality bases) assembled on 2008-07-21
> FMO03418.5prime
TTCGTATAGCATACATTATACGAAGTTATCAATCCACATGTTCCAAAACA
GCGCTGCCCGCCTCCTGGTCCCCGCTATGCGTATCGCCATGCGGAGCCGT
TGCCAGTCGGTCGTCTCTGGACCTCCGACCCAGCGCATCTCCACCGCCGA
GAAGGTGATCCTCGGCGGCGGCATGTGCGCTGCATCCTTGTTCATTCCCG
CCTGGGTGCTCTACCACATCCGGGACTACAAGGGCGACAAGGCAAGCTTT
CTAGACCAT
FMO03418.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:02:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CoVIII-RA | 406 | CG7181-RA | 94..297 | 38..241 | 990 | 99 | Plus |
| CoVIII-RB | 513 | CG7181-RB | 94..297 | 38..241 | 990 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21539243..21539354 | 149..38 | 530 | 98.2 | Minus |
| 3L | 28110227 | 3L | 21539075..21539167 | 241..149 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:02:00 has no hits.
FMO03418.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:59:49 Download gff for
FMO03418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CoVIII-RB | 94..303 | 38..248 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:18:41 Download gff for
FMO03418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7181-RA | 94..303 | 38..248 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:14 Download gff for
FMO03418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CoVIII-RB | 94..303 | 38..248 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:14 Download gff for
FMO03418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21539069..21539167 | 149..248 | 97 | <- | Minus |
| 3L | 21539244..21539359 | 33..148 | 95 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:59:49 Download gff for
FMO03418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21532344..21532459 | 33..148 | 95 | <- | Minus |
| arm_3L | 21532169..21532267 | 149..248 | 97 | <- | Minus |
