FMO03420.5prime Sequence
360 bp (360 high quality bases) assembled on 2008-07-21
> FMO03420.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCCACAGGGAAA
ATTCAAGAAGGCCAAGCTACCAGCAGCGATACAGAAAAAGAAGAACCAAA
AGCAAGCTGCTTTCACCCGTCGATCAAATGCGCCCATTCAGGCGAAAAAG
GCCAAGTTCAATGAGACGCAGAAGATCAAGTCCGTCATTTCGAAGTCGGT
CAACAAGAGCGTGGAGAGCGAACTGCGCTCCCGCGCCCACGAGGGCTACA
TCCAGTTGAGCAAGGCCCAGGAGGCGGTGGCCAAGCACCACGCCTCCCAG
GCGAAGGCGGCTGCGGCGGCCAGTACCGCCAAGTCCGCGGAAGCAAGCTT
TCTAGACCAT
FMO03420.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:09:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11279-RC | 1880 | CG11279-RC | 105..410 | 37..342 | 1500 | 99.3 | Plus |
| CG11279-RB | 927 | CG11279-RB | 105..410 | 37..342 | 1500 | 99.3 | Plus |
| CG11279-RA | 452 | CG11279-RA | 71..376 | 37..342 | 1500 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:09:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13047235..13047449 | 128..342 | 1045 | 99.1 | Plus |
| 3L | 28110227 | 3L | 13047081..13047171 | 37..127 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:09:52 has no hits.
FMO03420.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:49 Download gff for
FMO03420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11279-RA | 65..385 | 31..353 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:22:59 Download gff for
FMO03420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11279-RA | 52..372 | 31..353 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:43:45 Download gff for
FMO03420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11279-RA | 65..385 | 31..353 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:43:45 Download gff for
FMO03420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13047235..13047458 | 128..353 | 97 | | Plus |
| 3L | 13047075..13047171 | 31..127 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:49 Download gff for
FMO03420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13040175..13040271 | 31..127 | 96 | -> | Plus |
| arm_3L | 13040335..13040558 | 128..353 | 97 | | Plus |
