FMO03421.5prime Sequence
337 bp (337 high quality bases) assembled on 2008-07-21
> FMO03421.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGAAAATCTGTGGCC
CGAAACTATCACTTTGTGGTCTTATTATCTCTGTTTGGGGTATTGTCCAA
TTGGTTTTAATGGGTCTATTCTTCTACATAAATAGTGTAGCCCTCATTGA
GGACTTACCTCTTGAGGAGGAATACCATTCGTTGGAAGATTTTTATGCAG
CTGCAAATAGAGCATACAATCAGAATGCCTACAACTGCTGGATTGCCGCA
TGTATATATGTTTTGACTTTGTTGCTCTCCGCCCAGCAATTTTACATGAA
TAGCAGAGTAACTGCCAACGCAAGCTTTCTAGACCAT
FMO03421.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:14:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG40127-RA | 505 | CG40127-RA | 114..398 | 35..319 | 1425 | 100 | Plus |
| CG40127-RB | 1160 | CG40127-RB | 114..398 | 35..319 | 1425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:14:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 4187760..4187880 | 223..103 | 605 | 100 | Minus |
| 2R | 25286936 | 2R | 4187597..4187696 | 319..220 | 500 | 100 | Minus |
| 2R | 25286936 | 2R | 4187944..4188014 | 105..35 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:14:23 has no hits.
FMO03421.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:47 Download gff for
FMO03421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40127-RB | 109..407 | 28..329 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:22:06 Download gff for
FMO03421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40127-RA | 138..436 | 28..329 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:48 Download gff for
FMO03421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40127-RB | 109..407 | 28..329 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:48 Download gff for
FMO03421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 4187588..4187692 | 224..329 | 96 | <- | Minus |
| 2R | 4187760..4187879 | 104..223 | 100 | <- | Minus |
| 2R | 4187946..4188019 | 28..103 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:47 Download gff for
FMO03421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 75093..75197 | 224..329 | 96 | <- | Minus |
| arm_2R | 75265..75384 | 104..223 | 100 | <- | Minus |
| arm_2R | 75451..75524 | 28..103 | 94 | | Minus |
