Clone FMO03423 Report

Search the DGRC for FMO03423

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:34
Well:23
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG3348-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO03423.5prime Sequence

349 bp (349 high quality bases) assembled on 2008-07-21

> FMO03423.5prime
TTCGTATAGCATACCTTATACGAAGTTATCAATCGACATGCCTACCGCAT
CAGCACATCTGCCCATTCACAAGCGCCGGCCGCATGAGCACAATGGCGAG
CCCAGCTGCCAGGGTCTAGATGAGGTGAACCGCATGTTCCGGAATTACTG
GGATCCCACGGCCTACTGGGTGTGCGATAAGCAGGGCACACGGGCTCGTC
TCCAGCGCTGTCCGCAGTCTCAGCTCTACTCCGAGGAACTCGGCCGTTGC
GTCCACTATGCCGATTGGGCCTGGACGGATCCCAAGGAGCCGGCTGGCCG
AGCCAAGATCAGTCAATCGGTGTCCACAAATGCAAGCTTTCTATACCAT

FMO03423.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:27:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG3348-RA 543 CG3348-RA 122..415 38..331 1440 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:27:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27291663..27291956 331..38 1440 99.3 Minus
Blast to na_te.dros performed on 2014-11-28 22:27:29 has no hits.

FMO03423.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:57 Download gff for FMO03423.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3348-RA 116..415 31..331 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:22:58 Download gff for FMO03423.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3348-RA 96..395 31..331 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:15:03 Download gff for FMO03423.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3348-RA 116..415 31..331 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:15:03 Download gff for FMO03423.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 27291663..27291962 31..331 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:57 Download gff for FMO03423.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23117385..23117684 31..331 98   Minus