FMO03424.5prime Sequence
388 bp (388 high quality bases) assembled on 2008-07-21
> FMO03424.5prime
TATAGCATACATTATACGAAGTTATCAGTCGACATGTTCAAGATCCTGCT
TGTCTGTTCTCTCGCCGCCCTGGTGGCCGCCAACGCTAATGTGGAGGTCA
AGGAGCTGGTCAACGATGTCCAGCCCGATGGCTTTGTCAGCAAGTTGGTC
CTCGACGACGGATCTGCCTCCTCCGCCACCGGAGACATCCACGGCAACAT
CGACGGAGTCTTCGAGTGGATCTCCCCCGAGGGTGTCCATGTGCGAGTGA
GCTACAAGGCTGACGAGAACGGATACCAGCCCCAGAGTGACCTGCTGCCC
ACTCCTCCTCCGATCCCAGCTGCCATCCTGAAGGCTATCGCCTACATCGA
GGCTAACCCCAGCAAGAACGCAAGCTTTTCTAGACCAT
FMO03424.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:15:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lcp3-RB | 730 | CG2043-RB | 180..515 | 34..369 | 1680 | 100 | Plus |
| Lcp3-RA | 513 | CG2043-RA | 47..382 | 34..369 | 1680 | 100 | Plus |
| Lcp4-RB | 527 | CG2044-RB | 43..382 | 27..366 | 995 | 86.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:15:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8435557..8435880 | 46..369 | 1620 | 100 | Plus |
| 2R | 25286936 | 2R | 8437765..8438085 | 46..366 | 930 | 86 | Plus |
| 3L | 28110227 | 3L | 10890454..10890525 | 258..329 | 240 | 88.9 | Plus |
| 3L | 28110227 | 3L | 10892254..10892325 | 258..329 | 210 | 86.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:15:51 has no hits.
FMO03424.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:46 Download gff for
FMO03424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lcp3-RA | 42..386 | 29..374 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:25:14 Download gff for
FMO03424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lcp3-RA | 41..385 | 29..374 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:09:36 Download gff for
FMO03424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lcp3-RA | 42..386 | 29..374 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:09:36 Download gff for
FMO03424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8435557..8435884 | 46..374 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:46 Download gff for
FMO03424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4323062..4323389 | 46..374 | 99 | | Plus |
