FMO03427.5prime Sequence
431 bp (431 high quality bases) assembled on 2008-07-21
> FMO03427.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCCAGCAAGCAA
TTGGTAAACAATTTGTCCAAACTCGGCCTTCCGCGACAGAATTGGATGTC
CCCACTGGCCAGCGTTCGCCACTCCAGCTGCCGCGGCGACATCGAGAAGG
TTACACACACCGGACAAGTGTTCGATAAGGAGGACTACCGCAATGCCCGG
TTCGTGAACGCCAAGCGGTATGTGAACGAGAACTGGGGCATCAAGCTCAT
CGAGGAGGTGCCACCCAAGGAGTGCACCGAACGAGTTGTCTTCTGCGACG
GCGGCGATGGTCCTTTGGGTCATCCCAAAGTGTACATCAACCTGGACAAA
CCCGGAAATCACATCTGCGGCTACTGCGGCCTGCGCTTCGTCAAGAAAGA
TGACCATCATCATGCAAGCTTTCTAGACCAT
FMO03427.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:30:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8680-RC | 630 | CG8680-RC | 148..525 | 36..413 | 1890 | 100 | Plus |
| CG8680-RB | 867 | CG8680-RB | 62..439 | 36..413 | 1890 | 100 | Plus |
| CG8680-RA | 544 | CG8680-RA | 62..439 | 36..413 | 1890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:30:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5099736..5099913 | 345..168 | 890 | 100 | Minus |
| 2L | 23513712 | 2L | 5100008..5100141 | 169..36 | 670 | 100 | Minus |
| 2L | 23513712 | 2L | 5099605..5099674 | 413..344 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:30:16 has no hits.
FMO03427.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:52 Download gff for
FMO03427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8680-RA | 62..439 | 36..413 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:16:21 Download gff for
FMO03427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8680-RA | 38..415 | 36..413 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:43 Download gff for
FMO03427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8680-RA | 62..439 | 36..413 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:43 Download gff for
FMO03427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5099737..5099913 | 168..344 | 100 | <- | Minus |
| 2L | 5100010..5100141 | 36..167 | 100 | | Minus |
| 2L | 5099605..5099673 | 345..413 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:52 Download gff for
FMO03427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5099605..5099673 | 345..413 | 100 | <- | Minus |
| arm_2L | 5099737..5099913 | 168..344 | 100 | <- | Minus |
| arm_2L | 5100010..5100141 | 36..167 | 100 | | Minus |
