FMO03435.5prime Sequence
462 bp (458 high quality bases) assembled on 2008-07-21
> FMO03435.5prime
CTTCGTATAGCATACATTAAACGAAGTTATCAGTCGACATGGCGTCCACG
TCGAGTGTGAAGCTGATTGTTTACGCCCTGGACGTACTTTGCACACTGCT
AGCCTTGGTGCTGATATCCTTCGGCATCTATGTGGCGGTGTCCTACAACC
TAAACGAGATCGGTCAGCTGACGGCCTACGGCTACGTGGGACTCGGGGCT
GCTGCCCTGCTGGTTGTCCTTTGGGGATACCTGTCCGCCTGGCGCGAGAA
CGTGTGCTGCACAGTGACGTTCATTATTTTCCTGTGCCTGGTCATCATTG
CCCAGTTCGCCGTCGTCTACTTGCTGATCACCCAGGAGAAGACGGTGGCC
TCCAACCTGGCTAATGCCCTGGAGGCCACCTGGGAGGAGGAACTGATCAG
CCCTGGTGCCATGTCGCTGTACCAGAACTGGTTCCAGTGCTGCGGTCGCG
GAAGTCCCCAGT
FMO03435.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp42Ef-RA | 1347 | CG12845-RA | 375..798 | 38..461 | 2090 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7026984..7027157 | 96..269 | 870 | 100 | Plus |
| 2R | 25286936 | 2R | 7027218..7027380 | 269..431 | 800 | 99.4 | Plus |
| 2R | 25286936 | 2R | 7025384..7025441 | 38..95 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:57:17 has no hits.
FMO03435.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:10:25 Download gff for
FMO03435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Ef-RA | 363..798 | 25..462 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:34:10 Download gff for
FMO03435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Ef-RA | 361..796 | 25..462 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:45:20 Download gff for
FMO03435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Ef-RA | 363..798 | 25..462 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:45:20 Download gff for
FMO03435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7025372..7025441 | 25..95 | 92 | -> | Plus |
| 2R | 7026984..7027157 | 96..269 | 100 | -> | Plus |
| 2R | 7027219..7027380 | 270..431 | 99 | -> | Plus |
| 2R | 7027444..7027473 | 432..462 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:10:25 Download gff for
FMO03435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2912877..2912946 | 25..95 | 92 | -> | Plus |
| arm_2R | 2914489..2914662 | 96..269 | 100 | -> | Plus |
| arm_2R | 2914724..2914885 | 270..431 | 99 | -> | Plus |
| arm_2R | 2914949..2914978 | 432..462 | 93 | | Plus |
