FMO03436.5prime Sequence
666 bp (666 high quality bases) assembled on 2008-07-21
> FMO03436.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGGGGCTTATCG
GTACATGCAGGAACTTTATAGGAAGAAGCAGAGCGATGTGATGCGCTACT
TGCTACGTATTCGCGTTTGGCAATACCGCCAACTAACGAAATTGCATCGT
TCGCCAAGACCTACTCGCCCGGATAAAGCAAGACGTTTAGGATACAGAGC
CAAACAGGGGTTCGTGATTTATAGAATCCGTGTTCGCCGCGGAGGTCGCA
AGCGTCCAGTTCCCAAAGGATGCACTTATGGCAAGCCGAAGAGTCATGGT
GTAAACCAGTTAAAACCATATCGTGGTTTGCAATCCATTGCTGAGGAACG
TGTTGGTCGTAGACTTGGCGGCTTGCGAGTTTTGAACTCGTATTGGATTG
CGCAAGATGCTTCTTATAAATATTTTGAAGTAATCTTAATTGATACTCAT
CACAGTGCTATTCGTCGTGATCCAAAAATTAACTGGATCTGCAAGCATGT
CCACAAGCATCGTGAATTGCGTGGCCTTACATCAGCTGGAAAAAGTTCGC
GTGGCATTGGCAAGGGATATAGATACTCCCAGACAATTGGTGGATCTAGG
CGTGCTGCTTGGAAGCGCAAGAACCGTGAGCACATGCACAGAAAACGAGC
AAGCTTTCTAGACCAT
FMO03436.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL15-RI | 950 | CG17420-RI | 288..899 | 37..648 | 3060 | 100 | Plus |
| RpL15-RH | 882 | CG17420-RH | 220..831 | 37..648 | 3060 | 100 | Plus |
| RpL15-RG | 694 | CG17420-RG | 32..643 | 37..648 | 3060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 27267610..27267919 | 37..346 | 1550 | 100 | Plus |
| 3L | 28110227 | 3L | 27268090..27268394 | 344..648 | 1525 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:31:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 3070..3129 | 440..379 | 115 | 69.4 | Minus |
FMO03436.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:50 Download gff for
FMO03436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL15-RG | 22..649 | 28..656 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:26:57 Download gff for
FMO03436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL15-RC | 290..910 | 34..656 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:20:12 Download gff for
FMO03436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL15-RG | 22..649 | 28..656 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:20:12 Download gff for
FMO03436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 27267607..27267918 | 34..345 | 99 | -> | Plus |
| 3L | 27268092..27268400 | 346..656 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:50 Download gff for
FMO03436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3LHet | 2398143..2398454 | 34..345 | 99 | -> | Plus |
| 3LHet | 2398628..2398936 | 346..656 | 98 | | Plus |
